RNA id: TU156784


Basic Information

Item Value
RNA id TU156784
length 2428
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G116293
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19879905 ~ 19882409 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTTGCAGTCAAATTTACACAACCTGGGACATGAATTTTGGACACCAGAAGGCATGTTACACATGACACACTGTCACAGGTAGAACATAATATAGATGAGGtcttatatatattcttttgaCATTTAAGTTACATATATCGTCATTAATGCTTGTCATTACATACACATGCGTACAGAATACACTCTCTCCAACTTTCAAACATACTCACATACTCACTCTAAAAACGGTTACATTAACATAAATGTACAAAACACGGTCACAAACATTACAGGTCTTCATCAAGAGGTCCACCGACCTATGTGCCAAAAATATACATCTacagtgtactgtatatataatcaAGAAAAGACATCATTTGTACACCATGGCAAATTGATAGCAGGCGACATTTAAGAGCAGCTGAGCAACATCTGTACATTCAAAAATTCATTGGCAATCAatagatcacacacacacacacacacacacagaatagttacctttaaaggaatagtttgacaattttggaaatacaagaaatgttcgctttcttgctgagagtaaGATCTAGGGGGGACAGTTAGCTAGTGATAATCTAGATATAATGTAGCTATTAGTTAGCCAATATATACTAGCTAAGattaaacagctagctagtaGATATCAGCTTGTGGATGTACACTAATAGACAAGTTAGGCCTAGGCctacatcttgtttgtttaatctgcacAACAGAAGAGTAGAAATACATGTTGTGAGTTTACAGGAAGTTAAGTGGGGTGTTTCCTTTCAACAGGgccagctagctgtttccccccgcttccagtctttgtgctaagctaactggctgctggctgtagccttaTATTTAGCTTACACACATGAAAGTGGTATTAATCTTTTCACCTAACCTTCAGCAGGAAAGTGAATGAACATATTTCCTAAATTGTTAGACTATTGCTTTGAGAAAACTTGTCAAGTGCTTTTCTTTGACACATAAAGATTAGTGTGTTACCGTAATACTAAACTAACCATAAGGAGAGGTGCATGGGTGGAGAGAGGTGTGGTCAGCTTTAGCAAAAATTACATTACACAGCTTGCATTTATTATAGCAGTTAAAGGTGCCCCCAATTTTCAGTTATTACTCACATCTCAGTAAGTTTTGAAATTagttcacagtttgttttgaaatcaaagagagaagaaagaaaattcTAGGATAAAGATGGGGCATCAGTGCAGATTTAGAAAATTCCAATTTGTAGGCTTGTTTGTTGATTTGTGtaaagaaaaatcacaaaacTTAGATTTGAACGATGTTAAGCATGTGGCATTCAAGTGCCTCAATGCCCCACACTACCCCTATTTCATCCAAAATCCAAAGTACAGGGCTCAAAAGCAAATCAATGCCAGTCAAACTTCCCCCTCTCTATAAAACTGTCAAACAAAAAGATTTAAGACTATGCTGCCACCTTGTGGTAAACAAATATACAGCACATACATAGTAAAGTAGGGAGTTGTCTACTCTTCTTTTACAGACAGTAACAGCTTTTAGACATGGTCGTTTCCATCTGAGCCGATTTAGACTCAGAGTGACGGCTGGTGATAGAACACGTAAGCAGCAGCAGAGTGGTTTTTATCACACCCTCATACACACTTTGTGTTTTATCTGTTCTTCCACTTCCTAATTAAACCTCTGGCTCTAGTTCACTCGATAGTATCTTGTCACACGTTGTTTTGTCCAAAAGCAGCCAAGCAGATGCATAAAACTGATGCATATCCTCAGTGGTGTTTATGTTTTAGCTCGCTTTTTAgagtttttatatttgttttatttctcacaACCTCTGCAGCTTTTGGACAGCAATTTCCTGTGagttcctgtgttttttttgttttctttaaaatcagAAATGAGACATTATGCCACACATCTCACCAGTTgtcactacatttatggcacttTGACCAAGAGAGTCAATATAAATCAATGTAATGAAATCATACATCAGGCATATAACTAAATGACACATAAGTGTACTATGCATTGAGTCATTTCACATGGAACCAGTTTATggtaaataaatatacatacatcCTCTTCTGTTGAACAATATTCAATATATTGTTTAAAGATACTACATTCTTTTCATCAGCTCAGATGAcagtcaaaaaataaatatcttgAGTAAATATTGTGAATAAATCCTTCTGTACACATCGTACACATCACATTTCATCTTATTAAATGATTTCCTCAACTCAAcagttattgtttgtttgttagcttagtttgtacaaaaacaaaaaagacagaaagagaaaatggGCAACACTCTGCGATTGTCAAGAGCTGTCACATTAAAGCATTTTGTGTTGACCGTTACAACATGTAATGTTTTGAAGCTGTTTATGTGTTTGACGTTGGTGCTGAATTGAAATGG

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156743 lncRNA downstream 127711 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 200475 19679189 ~ 19679430 (-) True G116268
TU156633 lncRNA downstream 231782 19645322 ~ 19648123 (-) True G116181
TU156632 lncRNA downstream 239248 19639526 ~ 19640657 (-) True G116180
XR_005640773.1 lncRNA downstream 247033 19631497 ~ 19632872 (-) True LOC120568771
TU156782 lncRNA upstream 41803 19924212 ~ 19937413 (-) True G116292
TU156823 lncRNA upstream 443240 20325649 ~ 20325874 (-) True G116328
TU156868 lncRNA upstream 505089 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 507948 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 698111 20580520 ~ 20585677 (-) True LOC120568747
XM_039814818.1 mRNA downstream 84146 19793342 ~ 19795759 (-) True xcr1b.1
XM_039814819.1 mRNA downstream 84224 19793342 ~ 19795681 (-) False xcr1b.1
XM_039814821.1 mRNA downstream 84801 19793342 ~ 19795104 (-) False xcr1b.1
XM_039814724.1 mRNA downstream 88002 19789625 ~ 19791903 (-) True LOC120567744
XM_039816461.1 mRNA downstream 278433 19593467 ~ 19601472 (-) False tcea1
XM_039814817.1 mRNA upstream 493 19882902 ~ 19916863 (-) True LOC120567779
XM_039814793.1 mRNA upstream 64831 19947240 ~ 19956332 (-) False LOC120567774
XM_039814792.1 mRNA upstream 64831 19947240 ~ 19956328 (-) True LOC120567774
XM_039814816.1 mRNA upstream 74371 19956780 ~ 19962763 (-) True ftr67
XM_039814825.1 mRNA upstream 81417 19963826 ~ 19967558 (-) True LOC120567785
TU156767 other downstream 84196 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 414525 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 657179 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 944428 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1033628 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 1125640 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2379589 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2380714 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3547957 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3586211 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile