RNA id: TU157029


Basic Information

Item Value
RNA id TU157029
length 360
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G116507
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20827876 ~ 20828235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCAGCTCTATGTAGCGAAACTGCAGCTTAccggtggcgcatctctcctgacgagacaacatgtcggaactagtactcggtcccgtttatagcccgtgctcattcatttctggattctaacacatcgtcttttttctcttttgggatcttactggtccatgtttaaactcttgactggcccgtaggcctacttcaatcaggtaagtccctcctagagtagcgccgcctgctcttatggagacgtattacgtttctcagccgccacatgaagtaaacaaacacagctgcgttaattttttttaacgagttaaatattaaaaaattaacgcaaatattaacgcgttaattttgacagccct

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156980 lncRNA upstream 128667 20696904 ~ 20699209 (+) True G116465
TU156979 lncRNA upstream 131403 20693420 ~ 20696473 (+) True G116464
TU156977 lncRNA upstream 134735 20692887 ~ 20693141 (+) True G116463
TU156975 lncRNA upstream 135891 20691619 ~ 20691985 (+) True G116461
XR_005640642.1 lncRNA upstream 173726 20648605 ~ 20654150 (+) True LOC120567944
TU157036 lncRNA downstream 52457 20880692 ~ 20880996 (+) True G116514
TU157060 lncRNA downstream 120769 20949004 ~ 21009216 (+) False G116529
TU157061 lncRNA downstream 179805 21008040 ~ 21028982 (+) True G116529
TU157070 lncRNA downstream 193396 21021631 ~ 21030496 (+) True G116538
TU157136 lncRNA downstream 301373 21129608 ~ 21134012 (+) True G116583
XM_039814887.1 mRNA upstream 35377 20782255 ~ 20792499 (+) True usp14
XM_039814883.1 mRNA upstream 48131 20741261 ~ 20779745 (+) True rock1
XM_039814884.1 mRNA upstream 48131 20741261 ~ 20779745 (+) False rock1
XM_039815053.1 mRNA upstream 138246 20677357 ~ 20689630 (+) True abhd3
XM_039815168.1 mRNA upstream 304337 20507410 ~ 20523539 (+) True npc1
XM_039816647.1 mRNA downstream 54382 20882617 ~ 20915322 (+) True LOC120568904
XM_039816649.1 mRNA downstream 71320 20899555 ~ 20915322 (+) False LOC120568904
XM_039816648.1 mRNA downstream 73500 20901735 ~ 20915322 (+) False LOC120568904
XM_039816305.1 mRNA downstream 107200 20935435 ~ 20983609 (+) True pth1r
XM_039814545.1 mRNA downstream 188667 21016902 ~ 21019325 (+) True LOC120567629
XR_005640618.1 other upstream 452243 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1310931 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 1809150 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2153814 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 2473532 18305149 ~ 18354344 (+) True G115729
TU157037 other downstream 54471 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 1042718 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1779829 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1813275 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2848844 23677079 ~ 23685804 (+) True LOC120567964

Expression Profile