RNA id: XM_039816647.1


Basic Information

Item Value
RNA id XM_039816647.1
length 4093
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC120568904
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20882617 ~ 20915322 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAGTGACTAAGATCTGGTCAGTCTGGTGTGTTGGCTGTTTTTCACCCGTTTACTGCAGCACATGGATGGATGCGCGATTGCGCGGCTCTGATTGGCCAGGCACGCGGGCTCCCTACGTGCCATTACTGTTGTTCCGATTCACAAGCTCAAGAACACCGCTGGACTCAGTGTACCCATCTCTTGTTGGACTTGGAACTAATCTTCAATTATTTAAAGCGGCGGCTCGCACCATGGACGCTACCCTTTATCCGATCTTATTTGGGGAGCTCGGGGACCTAAATTGTAGTTTGATAGATGCTCTCCAAGACACTTTTTTGGAAAACGCTCCATTGTCATTGCTGAGCACTGATGGTTTATATTGCAATGCCACAACCGATGAGATTGGAACCTGCTGGCCGCGGAGCAGCACCGGGAGGATTGTAGAGAGACCCTGCCCTGAGTACATCAACGGGGTGAAGTACAACACAACCATGAGTGCTTACAGGGAATGCATGGATAATGGGACGTGGGCATTGAAAAGCAATTACTCCAATTGTGAACCCATTTTGGAGGAGAAGAGAAAATATCCAATGCATTATAAAATAGCGCTGATCATCAACTACCTAGGTCACTGTATCTCTGTGGGAGCTCTAGTCGTGGCCTTCATTCTCTTCTTGTGCTTAAGAAGCATACGATGTCTTCGAAACATCATCCACTGGAACTTGATCACCACGTTCATACTGAGAAATGTTATGTGGTTTTTGCTTCAGTTGATTGACCACAATATTCATGAGAGCAATGAGcCTTGGTGTCGATTAATTACAACAATATACAACTACTTTGTGGTGACAAACTTCTTCTGGATGTTTGTTGAAGGATGTTACCTACACACAGCCATTGTAATGACTTATTCAACTGATAAGCTCAGAAAGTGGGTCTTCCTTTTCATCGGCTGGTGTATTCCATTACCTATAATAGTAGCTTGGGCCATAGGAAAGTTGTATTATGAAGATGAACAATGTTGGTTTGGTAAAGAGCCTGGAAAATATATGGACTATATTTACCAGGGACCAGTTATTCTTGTGCTACTGATAAACTTTGTTTTCCTCTTCAACATAGTACGAATACTTATGACCAAACTAAGAGCTTCAACCACGTCTGAAACAATACAGTACAGGAAAGCtgtgaaagcaacactggtctTGTTACCTCTGCTAGGCATCACCTACATGCTGTTCTTCGTGAATCCGGGGGAGGACGACATTGCACAAATTGTTTTCATCTATTTCAACTCCTTTTTACAGTCTTTTCAGGGGTTCTTTGTGTCAGTGTTTTACTGCTTTCTAAATGGAGAGGTACGTTCTGCAGTAAGGAAACGGTGGCACCGCTGGCAGGACAACCACGCCCTTCGAGTGCGAGTGGCTCGAGCCATGTCAATCCCCACGTCTCCAACCAGGATTAGCTTCCACAGCATCAAACAGACCACAGCTGTGTGACCAGAACATAATCTCTACGACAACATCTAAGGGAACAGATTTAATATTTTTGTCTAGTACAGACAATAAAGTGATTCACAGAACGGACTGATTCCAAGGCCGTGATGTGTCCAGTGTGACTGGAGAGCCAGGCAATTTCTCTTGTCTGGTGAGAACAATTTATTGCATCTAAAAGAAAACGTTATGAAGTCATATGAAGTCCAATGGGCACATGATTCTTGGAAAATGTATCTCCGGTGACATATTGTACATGTGTTAGAGCATTTGATGTTTTCTAGAGTGTATTAAAAAGCCTTAAATGGCATCATCACCGAACTGTCACATCACAGCGAGTCTTATCTATCTTCTTCTTTCATCTTACTGCTTAATGGTTGTTAGTGGAGCAAGATAATCCTACAGGATTTGCAGAAGGATGCTTCAGCAGCTCACGCACGTGTAGACATCTGCTCCATTGTTACTTAGTGAGAGACATTGACCAAGCTGCACTCAAAAATGCTCTCAGATTTGTATTTAGTGCAATTAATATCAAAATGCAAAAATGCTCTTTgagttaaatgttttttgtcaccAACAGCTGCGTTTGACTGCTAGAAAAGAGGCTTTGGGAAAGAAAAgataattaaacataaaaaactaTGGTTTAAAAGAcataagatttaaaaaatgcaCTATTTCTcttgtgaaaagaaaatggaaCACTTTTCAACACACAATCTCAATACATGGTGATACATTTTGGTCAATATGAGATGATTTTATACAAACAAGCCATTCTAATGAAGCCTCTATAATGTGTCTTCAGAGCAGTCTTCACTTAAAGTCtgtgttcttttattttttttcatactgtacTGTTGTGAACATTGTTAAAAAACTTGTTCAGCTTCCTCTCTGTCACCTCAATTTTTCGCTTCCCCTTTGCTgggttttgctttttttctttctcctcagAGGAGGGTGTGAACAATTTACTGTAATGCGTCGTGTTAAAGACTGATGGATGAGCAATCCCAAATTACATCTCTCTTCCAAACAAGTAAAGATAAGATTATATATTACATACAGTAGAGTTGGGGAAAGTGATTCTAAGTCATTtatgtaatgtactgtatatgtatggatTCTCCATGCAGGCACAGTGGAAGCAGATTCAATTCTTTTGGCTTTCTGAAATCCTTGTGGCTTTTCTAGTAATCAGTGTCACAACTAAGCTGCTGGTTTAAGAGAAGAGAAGCTTGATGAAGTGAGCACCAAACACTTGCCTGTAATGCCCACTCTTACATTGGCTCAGGCTGCTCACACACTAATGAGAACAACCATCTATCTGCAAGGTCAAActccaaaaatattttttgttttctctaaaAGGATAAGGAGGGGAGAGGAAATGTCAGCTTTGAAAAGGATTAAAAACGATCAAAAAAGTCTGAATTATGTTGCAAGCTTAAGTTTTGATGCAGATGGTCCTTTATGTGTACCTAACAtttgcataacatcagaagaaGATTTCTGTCAGGGGGTACAATTAAGAatgtttaaaggaatagttcgacatttttggaaatatacCTATTCATGTGCTTGCGGAGCGTTAGATGACAATAGAAACAGATAGCTTGGCTCTGTTCAAAGGAGTCtccactggttgcctggcaacctaaTGGAACCTCATAAGCTAAGCTTACAAGCTGCTGCCTATAGTTTCAAATGTAACCAACAGTCACGAAAGTGGTATTGATCtcagcaagaaaacaaatatgcatattttcaacaattttgaaaataaataatcttaGGTGTATTTCAGTTTgggtttgtatttatttatttgtgttttctgtagTTATTTGCAATGTTATTTCATACTTTTATCAGGACTAAATCCACTGGATCTACTTTAGATTTGGATTTTCAAAAGTaagagaaaaaatactgaatttCTGTGGTCAAATTAGTTTGAGGGTGTTGTATGAGTATACAATATATCATACTTTCTTGTAGTAAATTGtaaattttacatttgtaaattgttgttacattacagcagactttttgttgttgctgcttgaCTGGACTGATATCAAATGTTGATGATCATCCAAAGCGATTTTGATGTAAATATTTTAGTGTAACTGTTTCCACCATCACAACTCATGCAGCTGTAACACTGCTAATCTTTCCATGACCTCATCATTTTATGTAAACATGAAAAGTACATTATCTAGCCAAATATTTCCATACAGAAGtaagaaaacaaataatttgTTCAAACTCACCAAAGAGACAAACCATGTTTACCAGCATTTATTACTGTCtacatatttttattgttgCAATTGCACTTTGTAGACCCAATCTTGTTGACTTTATTTTGTGCACCATTTATTGTACATGATGTGATTCCAGATTTGTTAACTTAATACTGTACATGAATACATTTGACTTACTGATTCTATAGAAAACCTTGTTTTGTTGAACCACCCATGTTgccttaaaaacaaaagaaaatgtagctaatgtctctgtaaatgatgtATCATTGCATTCCTGATATACATTTGTACATGCACATGTGAAAGGGAAAAAATTGATTTGAATAAAATTCATACAATTTTT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04579 CRHR2; corticotropin releasing hormone receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157036 lncRNA upstream 1621 20880692 ~ 20880996 (+) True G116514
TU157029 lncRNA upstream 54382 20827876 ~ 20828235 (+) True G116507
TU156980 lncRNA upstream 183408 20696904 ~ 20699209 (+) True G116465
TU156979 lncRNA upstream 186144 20693420 ~ 20696473 (+) True G116464
TU156977 lncRNA upstream 189476 20692887 ~ 20693141 (+) True G116463
TU157060 lncRNA downstream 33682 20949004 ~ 21009216 (+) False G116529
TU157061 lncRNA downstream 92718 21008040 ~ 21028982 (+) True G116529
TU157070 lncRNA downstream 106309 21021631 ~ 21030496 (+) True G116538
TU157136 lncRNA downstream 214286 21129608 ~ 21134012 (+) True G116583
TU157170 lncRNA downstream 328319 21243641 ~ 21244393 (+) True G116616
XM_039814887.1 mRNA upstream 90118 20782255 ~ 20792499 (+) True usp14
XM_039814883.1 mRNA upstream 102872 20741261 ~ 20779745 (+) True rock1
XM_039814884.1 mRNA upstream 102872 20741261 ~ 20779745 (+) False rock1
XM_039815053.1 mRNA upstream 192987 20677357 ~ 20689630 (+) True abhd3
XM_039815168.1 mRNA upstream 359078 20507410 ~ 20523539 (+) True npc1
XM_039816305.1 mRNA downstream 20113 20935435 ~ 20983609 (+) True pth1r
XM_039814545.1 mRNA downstream 101580 21016902 ~ 21019325 (+) True LOC120567629
XM_039814553.1 mRNA downstream 111178 21026500 ~ 21045564 (+) False gjc2
XM_039814552.1 mRNA downstream 123713 21039035 ~ 21045564 (+) True gjc2
XM_039814554.1 mRNA downstream 133032 21048354 ~ 21051342 (+) True iba57
XR_005640618.1 other upstream 506984 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1365672 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 1863891 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2208555 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 2528273 18305149 ~ 18354344 (+) True G115729
XR_005640709.1 other downstream 955631 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1692742 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1726188 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2761757 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2935557 23850879 ~ 23855157 (+) True G117319

Expression Profile