RNA id: TU157170


Basic Information

Item Value
RNA id TU157170
length 268
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G116616
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21243641 ~ 21244393 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTAATGTTAAGGCTGGCTGTGGTCTGCTggtctccacacacacagctgtagtCTCCACTGTCTTGTGGCACCACTTTGTTGATCAGGAGTTCATTCACAGAGGCCTTCTGCTTCATCTGGTACTTTTCTCCAGACTTCAGGACCTGTGTTCCCTTCTTCCACTCTACAGGGACTCCAGGTTTAGAGAGCTCACAATGCAGAGTAACACTTTCTCCCTCCTCAGCCTCCTGGCACTCCAGCTTCTGTTTGAACGTCACTGTTTGGGC

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157136 lncRNA upstream 109629 21129608 ~ 21134012 (+) True G116583
TU157070 lncRNA upstream 213145 21021631 ~ 21030496 (+) True G116538
TU157061 lncRNA upstream 214659 21008040 ~ 21028982 (+) True G116529
TU157060 lncRNA upstream 234425 20949004 ~ 21009216 (+) False G116529
TU157036 lncRNA upstream 362645 20880692 ~ 20880996 (+) True G116514
TU157251 lncRNA downstream 26358 21270751 ~ 21326263 (+) True G116657
TU157330 lncRNA downstream 209937 21454330 ~ 21500394 (+) True G116723
TU157363 lncRNA downstream 369707 21614100 ~ 21662470 (+) True G116746
TU157416 lncRNA downstream 590073 21834466 ~ 21838752 (+) True G116794
TU157417 lncRNA downstream 590073 21834466 ~ 21836347 (+) False G116794
XM_039815362.1 mRNA upstream 34957 21200717 ~ 21208684 (+) True guk1a
XM_039815364.1 mRNA upstream 34957 21201685 ~ 21208684 (+) False guk1a
XM_039815365.1 mRNA upstream 47884 21192298 ~ 21195757 (+) True arf1
XM_039815366.1 mRNA upstream 47884 21192406 ~ 21195757 (+) False arf1
XM_039814767.1 mRNA upstream 64810 21163720 ~ 21178831 (+) True wnt3a
XM_039816563.1 mRNA downstream 40759 21285152 ~ 21290501 (+) True abcb8
XM_039816532.1 mRNA downstream 47313 21291706 ~ 21298333 (+) True cdk5
XM_039816082.1 mRNA downstream 183626 21428019 ~ 21428679 (+) True zgc:92591
XM_039816085.1 mRNA downstream 190574 21434967 ~ 21439933 (+) False asb10
XM_039816084.1 mRNA downstream 190575 21434968 ~ 21439933 (+) False asb10
TU157037 other upstream 328353 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 868008 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 1726696 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2224915 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 2569579 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 626560 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 1363671 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 1397117 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 2432686 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2606486 23850879 ~ 23855157 (+) True G117319

Expression Profile