RNA id: TU157416


Basic Information

Item Value
RNA id TU157416
length 1942
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G116794
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21834466 ~ 21838752 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCGAATCTCAACATCTTTCAAATAGCAGGTTAAACATACAAAAAGCTCACTTAACATACTggttttttattaaatatgtaAAAAGCAGGTCAAGTTATTCACAAATAAAATGCAAACATGCAACACGTTTTGTGGGGGAATGCATAATGAGTGggacatgaaaaaaacaaaacatttaccATTCATTAATTATTGACAGTACATGTTTACATTCCTTTTCAtttatacaataatatataactgAATCATTATGGTGCACTGCCCAGTTCAATATTAGTAAATGCAATATTAAGAAAGGGTATACAATGTACTTACTGGAATATAGCATGGCAAATTACTCAGTGAACTGACTCTCCCTAAGAcctgtggtttaaaaaaaaaaaaaaaaaaacacacatctgAAATCTGAACAGACCACAAGTTCCAGCTGAGGTTTAAAACTTAAAATGCTGCATTGTAATAAGACTAGTCCACAATAATGTTTCTTCCTTCCAAACGTTCATGGCATACCAAGTTAACTCTATTACCAAACCACTTTGTATGGTGTGAATAACACATTGTTGAGCACACTGATTATCTGAAATTTGTGAGGATAGTTGTCAAACAATCATAAGTTGCCATTATACTACATTTTATTCACAATTCATTGACTGTATTGCCCTCCTTCATGAGGCTGCAATGCAGAATCTCGCACTATTCCTAaggcttaataataataaatatggtGAGGGTCTATGGACAGATTGTCCAATACAGAGTCAAATGTCAGTGCAACATATGGAAGGAGGTTAAATAAGAGCTACTACGAGCCCTTTCAGGGCTTTGCTTATTGCATTCTTGTGATTAATATTGTTgatatgcaaaataaaaaactaaataaaattgaaaaaaggaCAGAAGCTGGGAAGTTAACACTTGCACTGACAGGTAACAGCTACCTGTCTAAACTTCAGCATTTCATAACGTCTACTGGAGGATTTGAATTGACTTTCCACCCACACAGTCCTTGGAAACTTCTGTGATGGTCTGAACGTGTTCTGCTGGTGAAGGTAGTCACCACAAACCTGCCACAGCCGTTCaccaaaagtcacaaaaaacatCAAACAGTGAGCAGAGggatacaaaaaataaaaaccggtGATGGTGCTTCTATTCAGGAGGTGGCTTCGTGTGCTCAGTCTTGGAGAGAACAAAAGAATAAAccatgaggaaaaaaaatgaaaatcctTTAACAGTTCTCACATATTAAAAAGAGGGGTCTGACTGCAGTGAGGGACGATGGCAGTCAGTATTCATCCTGTTCCTCCTGCTGATCATCTGGCGCCTCCTCATGGGCTTGCTGGTCCACTTCCTGTCCGTCACCCTCAGCCAGCTCTGCCCCTTCctgttCGTCTGAAGCATAAAGGACTTCCATTAGCCGTTCGACAAACGGGGCATTTTCTTCACCATGTTCCTGGCACAGCAGCTCCACCTCTCGCAGCTTGCTAAAGTAGTAgtccctctccttctccactCCTTCCAGTGCCGACTTTAATGTATTCATCTGCTCGGTTAGTTGTGTGACCTGTGCTTCCAGTTCTTTCTCTCCTTTGGCAGGAGCTGGTGTTGCAATTGCAGGGATCTTTTTGGCTGATGAGGGTCTGGATGTTGGTGTTGAGGACTTGGGGGTTGCAGAGCTCGACCTTGATGCTCCTGCAGTAGGGGAGCTGGCTGCATGTTGGGACTTCTTTGGCAGGTTGAAGATCTGCTCACCAGGGTCTGGTGGGGGAATGGCATCCTGACCCTGTCTGGCTGCAACTGGGTCATACTCTTTACCATCGTAATTGGCATCAAAGAACTTCTTAAACCACTGGATGAAATCGAGATTGTCTTGAAATCTGCCTTTAACCAGTTTCTCCACAGGAATAATCTGAAACAAGAAAGAGCGAAAAAGAGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157363 lncRNA upstream 171996 21614100 ~ 21662470 (+) True G116746
TU157330 lncRNA upstream 334072 21454330 ~ 21500394 (+) True G116723
TU157251 lncRNA upstream 508203 21270751 ~ 21326263 (+) True G116657
TU157170 lncRNA upstream 590073 21243641 ~ 21244393 (+) True G116616
TU157136 lncRNA upstream 700454 21129608 ~ 21134012 (+) True G116583
TU157508 lncRNA downstream 96767 21935519 ~ 22020278 (+) True G116857
XR_005640669.1 lncRNA downstream 186361 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA downstream 186361 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA downstream 186361 22025113 ~ 22035741 (+) False LOC120568180
TU157612 lncRNA downstream 396067 22234819 ~ 22236599 (+) True LOC120568856
XM_039815194.1 mRNA upstream 35612 21797438 ~ 21798854 (+) True cebpd
XM_039814536.1 mRNA upstream 124823 21707253 ~ 21709643 (+) True snai2
XM_039815402.1 mRNA upstream 173958 21648818 ~ 21660508 (+) True pcmtd1
XM_039815403.1 mRNA upstream 173958 21648818 ~ 21660508 (+) False pcmtd1
XM_039815399.1 mRNA upstream 191970 21602052 ~ 21642496 (+) False st18
XM_039815806.1 mRNA downstream 32201 21870953 ~ 21897183 (+) False LOC120568354
XM_039815807.1 mRNA downstream 32201 21870953 ~ 21893132 (+) True LOC120568354
XM_039815805.1 mRNA downstream 32201 21870953 ~ 21891619 (+) False LOC120568354
XM_039815812.1 mRNA downstream 60816 21899568 ~ 21916897 (+) False klhl14
XM_039815810.1 mRNA downstream 60825 21899577 ~ 21916897 (+) False klhl14
TU157037 other upstream 919178 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1458833 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2317521 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 2815740 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 3160404 18672562 ~ 18674062 (+) False LOC120568691
XR_005640709.1 other downstream 32201 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 769312 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 802758 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1838327 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 2012127 23850879 ~ 23855157 (+) True G117319

Expression Profile