RNA id: TU157795


Basic Information

Item Value
RNA id TU157795
length 261
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G117082
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22752252 ~ 22754490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCACGGTCTACTTCTTGGCTCCTCTGGATAGAGCTGTGGTTTTTGTTTTGGGTTATGATTTGCTTTTCTATGGTTTCGGAGTCATCTCCCCATGGAGTTGTCTCAATCATGCGCTTCTGTTGGGCAATCCAGGCCATGGCATCATTAAAGATCCTCCCCCCCTCAAGGGAACCCACGCTGCCTCTGTTCCGTCGTATGGTCACACTACTGACTAATTGCTGTTGCAAAGCACCATGCATGTGCTGGAACTGTTCTAAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157787 lncRNA upstream 4520 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 279412 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 437305 22307767 ~ 22314947 (+) True LOC120568744
XR_005640796.1 lncRNA upstream 513747 22235912 ~ 22238505 (+) False LOC120568856
TU157612 lncRNA upstream 515653 22234819 ~ 22236599 (+) True LOC120568856
TU157860 lncRNA downstream 163386 22917876 ~ 22918106 (+) True G117128
TU157944 lncRNA downstream 619220 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 622643 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 685081 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 691861 23446351 ~ 23462300 (+) True G117219
XM_039816921.1 mRNA upstream 63479 22687094 ~ 22688773 (+) True LOC120569076
XM_039815727.1 mRNA upstream 70959 22641510 ~ 22681293 (+) True LOC120568311
XM_039815728.1 mRNA upstream 70959 22641510 ~ 22681293 (+) False LOC120568311
XM_039815729.1 mRNA upstream 70959 22641510 ~ 22681293 (+) False LOC120568311
XM_039815112.1 mRNA upstream 120057 22623529 ~ 22632195 (+) True LOC120567970
XM_039815350.1 mRNA downstream 10162 22764652 ~ 22804767 (+) True LOC120568105
XM_039815351.1 mRNA downstream 12987 22767477 ~ 22804767 (+) False LOC120568105
XM_039816768.1 mRNA downstream 52674 22807164 ~ 22811897 (+) True LOC120568988
XM_039816769.1 mRNA downstream 52675 22807165 ~ 22811897 (+) False LOC120568988
XM_039814979.1 mRNA downstream 73386 22827876 ~ 22866501 (+) False dsc2l
XR_005640697.1 other upstream 73521 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 139843 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 854861 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1836964 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2376619 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 922589 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1096389 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1113764 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 1151380 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 1158174 23912664 ~ 23914498 (+) True hes6

Expression Profile