RNA id: TU157870


Basic Information

Item Value
RNA id TU157870
length 1961
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G117137
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22960515 ~ 23110187 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGCGGCTAAAAGACTTTTCCTCTATACAGTCTTACTTGGTTATAGTCACTGCATCTCCCGACAAAAGCGCATGGTTGAATTTCCGCCTAACATTGTTAAAACCGAGCAGCTAATATTATTAGCGAGAGCAAAGTTAGCAGACGGCCAAGTGTTTAATTGCTACCTAGCCTACATAAAAGTGTATCAAATTAGCTTAGCTGAAGTGATGGGGACACCTAGCACAGCTGCAGACTAGCCTCCTGTGACTACACAGCCACCTGACACTCAAAGTGGCCATGCCGTTAATATGCAGAACAGCATtcctgaaaattatttaaacagTTCTCAAGGGCAGGTTCTCATTTTTAAACCATGGCCTGGTGAAACGTGTCCATTATTTGAGGGAGCTACGGACTAAATTCTCCTCTGAGACTGAACCAGTAGAGAAGTTGAACCTGGAGCAGATTGTGGAGGACTTTGCGGTGCACGAAATTCAGAATGACGAATGATATGGTGCGTTTGTGGACTGGCTTCAAGTGAAAAAACATCACAGTGGAAGTCAAAGTGATGCTAGGTGGAAGATTGACCTTTGAGAGGTGTCCGAGGGCTGGTGGCCTGGAGGGGCCCTTGATTCAACACCTTTTACTCTGCACAATTTGATGCAGCGTGGAGCACTGCAGCACGGCGGCCTTGATGGCACTGGAAGAAAAATGGACGAGGTCAGCAGCACTTTCACATCCGCTGCACTTCTTCATGCTGACTTTGTGTTGATACAGGACTATCACACAGTTCACAATCCCACATACTGTAATTCAGGGCTCAGTCATTTCTGCTGAAAGCCAAAAATAGATaacaagacacacatgcacatagcCTCTTTCTTTTGAATTCACTGGCTGCTTATGTAAATCGACAGAGCCACAGATCCAGTATTTTGAAATGACACTCAGTTGGAGAGAATATATTCTCTTTTGGTATAAACACACATATTGTGACCCCCTTGTCACCGGCAATCCCTTGCATGTCAAAGGTGGCTTTGGAACAAATTAGTGACTGGAAAGGACCAACCTAGTCCTCAAAGCCATTATCAATTCCAATCAAGACTCATTGTTATGCATTCAATAAAAGATCTCTAAGGACCACAGTAATGCTCTGATTATTCTCCTCTTGTGCCAAATCGGCTCGTTCAatcttttatgtcatttgaaCAATGGTGCCAAATAGAGCTATGCATGTATTAgggagcacatacacacacatttgtaaatgtatggTGTGTATCTATGCTGTGCATGTCTAAATCTGGTTACTCTAATTTGTTTCTGGCTTTCACATGTATTTTAAAGCaaggtcatagtatgtcatCCTCCACAAATATAATGCATGATGTGTTTTAACCAAAAAATATTGCATCATTActttgctgaaaatgtgtaacCTTAAAAAGGATCTGTAGTGTATGCAAAGTGACAAACAGCGACAGTGACATGCAAGAACATTTCCActgaatgttttatttgtaatttcTTGTGAAAAGACATGTCAGTAAAACAGCTTGATGCCACCCCTTGTCGACAAATAAAGGCAAAATGCTGCTTAGGCAACAGCTCCTACAACATCTTCTGAGTCACAGGGCTCTGGCCCAATTTAGCGATTGTAGTTTTGTAGCTGGGAGCCACATCTGCCTGCTGTGTGCTGGTGTGGCACACGGAGCTAATAGTGATTGATTGCCTGATTAAGGAAAATTGTGTTGAACTCCAGAGCAACCcaaggagagaagagagcaTCTTCAGTTAGCGATGCAATAAAAGTGTGGCTATTGATTTGTAATGGCACATGTGTGCAAAAAGGCAGTTGTCTCAATTATTCATTTTTCACTTGTTATCCTGTATTTTCTTTCGAACAAACAATGtccaaaagatttttttgcaTGCAAATTGTTTCTTGCTAATTTCTTCatcattttatattaaaaacggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157851 lncRNA downstream 94557 22836055 ~ 22865958 (-) True G117119
TU157843 lncRNA downstream 125634 22833066 ~ 22834881 (-) True G117114
TU157848 lncRNA downstream 134932 22825373 ~ 22825583 (-) True G117117
TU157840 lncRNA downstream 150762 22807072 ~ 22809753 (-) True G117112
TU157764 lncRNA downstream 286065 22670733 ~ 22674450 (-) True G117055
TU157899 lncRNA upstream 55278 23165465 ~ 23165756 (-) True G117158
TU157964 lncRNA upstream 221192 23331379 ~ 23337618 (-) True G117203
TU157968 lncRNA upstream 229349 23339536 ~ 23341315 (-) False G117205
TU157966 lncRNA upstream 229636 23339823 ~ 23341315 (-) True G117205
TU157969 lncRNA upstream 231167 23341354 ~ 23341923 (-) True G117206
XM_039814977.1 mRNA downstream 135868 22815966 ~ 22824647 (-) True LOC120567909
XM_039815352.1 mRNA downstream 202901 22739634 ~ 22757614 (-) True LOC120568106
XM_039815353.1 mRNA downstream 202903 22739634 ~ 22757612 (-) False LOC120568106
XM_039816311.1 mRNA downstream 222267 22703464 ~ 22738248 (-) True LOC120568657
XM_039816919.1 mRNA downstream 265841 22689074 ~ 22694674 (-) True LOC120569075
XM_039815743.1 mRNA upstream 61871 23172058 ~ 23177122 (-) True psma8
XM_039816776.1 mRNA upstream 203180 23313367 ~ 23317690 (-) True LOC120568995
XM_039817030.1 mRNA upstream 235531 23345718 ~ 23361580 (-) False LOC120569135
XM_039817031.1 mRNA upstream 235531 23345718 ~ 23354761 (-) False LOC120569135
XM_039816223.1 mRNA upstream 252842 23363029 ~ 23421777 (-) True LOC120568611
TU157659 other downstream 691956 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 697017 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 1949946 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 3164806 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 3495135 19464700 ~ 19465380 (-) True G116138
TU158039 other upstream 320179 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 358433 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 757765 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 758968 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 910175 24020362 ~ 24020438 (-) True LOC120569137

Expression Profile