RNA id: XM_039815088.1


Basic Information

Item Value
RNA id XM_039815088.1
length 3848
RNA type mRNA
GC content 0.46
exon number 26
gene id LOC120567964
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23592732 ~ 23685804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagaacaaagttGGTTGGTCAGTGAGCTTCAGGTGAATATTTTTGTATTGCAGATTATTGCTATATGGGACCATGAACTCATCAGCAGGTGCAGGAAACTACCGCAGGGGATCCACCAAGGGAGAGAAGGACCTGGTGGGCAGTGCTCCGCCGCAGAGGAACTGGAAAGGAATAGCCATCGCCCTGCTGGTCATCCTCATCATCTGTTCCCTGATTGTCACCTCTGTCATCCTGCTGACCCCTCGTGAAGATGACAGCCTCGCCCTTAAGAAGAAAGTGACTATAGAGGATGTTTTTGGTCCAGACCTTCACATCCATGATCCAGATGCCAAATGGCTCAGCGACAATGAGCTGCTGTATCGTACAAGGGAAGGAGATGTTGTCAAACTTAAAGTTGACACAAAGGAGAGAACTGTTATTGTGCTGAACCAGTTGTTTGACAGATCCAGAGCCGCCCGGTACCAAGTGTCTCCAGACATGCAACATGTGTTGTTCGCCTTTGAAGTGAAACCGATCTACCAACACTCCTATGTGGCCAAGTACATTATTTACAGCCTTGTGACACAGGAAACTTGGCCTCTGAATCCCCCTGAAGTGCATGACGCTGTCCTGCAGTTTGCTGGATGGGGACCCCGAGGCCAGCAGCTGATCTTCATATTTGAAAACAACATTTACTACAGATCAACAGTAGATAACCGAGCAATCCGCCTGGTTTCCACTGGTAAAGAGGGAGTCGTCTTCAATGGCCTTGCTGACTGGCTGTATGAGGAGGAGATCCTGCAGACTCACATAGCCCACTGGTGGTCTCCAGACGGGCTGCGTCTGGCCTACATGACCATCAATGACACGCTGGTGCCAAAGATGGAAGTTCCCTTCTTCACAGGAACGCCGTACCCCGCCACCTTGGAGTATCACTACCCAAAGGCTGGGGAGGAAAACCCTGTAGTGCACCTGTCAGTGGTGAGCCTCAACGGTCCCCTGCACACTGTTGTGATGAAGAAACCTGATGACCCCCGAATAGGGAGGGAATATTATATCACTATGGTAAAATGGGCTACCAGCACCAAACTGGCTGTCAACTGGCTAAACAGAGGCCAGAACAACTCTATCCTGACACTATGTGAGGCTACAACTGGAGTCTGCATTAAGAAACATGAGGATGAGAGTGAGAGCTGGTTGCACAGACAGAATGAAGCACCGCTCTTTTCCCATGACGCACACAAGTTCTTCTTCACCAGAGCAATCCCTCAGGGTGGGAGAGGAAagtttttccacatttctatGTCCACCTCTCTGCCTAACACGAGCACAGACATACTTCAGTCTCTGACCTCTGGAGACTGGGACGTCACCAGCATCTTGGCCTACAATAATAAAAGGAACCTCATATACTTTCTAAGCACAGAGGACGACCCCAAACGACGGCACTTGTACAGTGCTGACACCATCCCTCCGTTCAACCGCTGCTGCCTGTCTTGTGAGTTCAAGTGTGGCTATGTGGAAGTTTCATTCAGCCCCAACATGCAGTACTTCTTACTCAACTGTAAAGGTCCAGATATACCGAGTGTGGCTATCTATAGCACAGAGGACAAACAGAAGGTGTTTGACGTGGAGACAAACGAAAGAGTAAACAACACGTACAACAACATGCAGATGCCCAGAGTGGAATACGAGACCATCACCATAGACGATTACACTCTGACAATGCAGATTCTGAAGCCAGCTGGATTCATAGCTACAGCCCATTACCCCTTACTGCTGCTAGTGGACGGTACGCCCGGCGGGCAGATGGTGTCGGAGCAGTTCCGAGTGGACTGGGCCACGGTTTTGGTCAGCAGCTTCAGCACTATCGTCATCCGCTTTGACGGCCACGGCAGCGGCTTCCAGGGCACCAACTTTCTCCACAAAGTCAGGAGGAAACTGGGAAGACTAGAGGAGAGGGACCAGCTAGAGGCACTCAGgttcatatCCAAAGAGCATTATATTGATCAGAGTCGCATGGGAGTTTATGGAAAGGCCTATGGGGGATATTTAGCCACGATGCTTCTGAGCTCTGAGGAGTTTAACCAACTTAAATGTGGAACAGCAGTCTCCCCCATTACAGATTTCGAGCTCTATGCATCTGCATTTTCAGAACGATACCTCGGCTCAAAGACAGATTCCCGAGTATATACGATGGCAAATTTAGCACACAGAGCAGGTCAGCTTCTGCAAAAGCAATACTTGATAATTCACCCAACTGCTGACGAGAAGGTTCACTTCCAGCACACGGCAAAATTTATCAATCATTTAATCAGCGAGAAGGCCAATTACACTCTACAGATTTACCCAGATGAGGGACACTTCCTACACAGTGACGGGACGCAGCAGCATCTGAGCCAATCCTTGGTCAACTTCTTCGAGGTGTGTTTCAGGGTGCCAGAGATACTGACAGACGAGCAGCAGGAAGATGACGAGGACGACAGTTAAACCTACCCCTCTGAGCAGCGCCCAGCCACCTACTACAGCACAATATGCAACAGGTCTTTCTAAACCCAGTCAACCCACACCACCTGCTGTCCATCCAGATTTTAGCTCTACTCTGAAGCACAGCACCTGCATGTGCAAAAGGGGCCTCAGCCTACAGCCCCTCTCCTCACCTCATGCTGGATGCTGGTcagaaagacaaaataaatctcaGATGTGAACggtcacatctctctctctgctatTAAAATATATGGACTATtactccctctggtggacaaataGAGGATCAACATAACATCCATTGAGCAATGCGTCTCCATTCCAAACCAGGCATATGTATTAGGCGCTTTGCAGCACAAAATATCCCCTGTGAAGATCATTATGTTGAGATTTAACTTTGGAAAGGCCACCAGTTTCTGATAACCTTGCCAACCAACTTACTGATTATTGTGTTCATGAGAATGATTACTGCTACTTGTTTCTCAGAATTTCTCTGTTCAGTGTCGTGTCTATGAGTGGATGTCTGGCTGCATCAGTCCATAGTTGCTTTACAAAACAAAGGCACAATGTTTAACTTGTGttgtacttttaaaaaaaaaagtgtctataCAAAAATGGTATGAAATCTTATTTTCCTCATAATTCTGAATTTAACTCTTGTTCTTTTAGTCACTGTGCCTTACTGTGGGAGAAATGCTAATGATGGGAGCCCATATGACACTGAAAATGAGTAAATATGGATAGGCCTTGTCTGAACTGTGGACTCAAAACAAAAGTTAACTTTCCTCAAATAGTAGCAAGTTATTGGTATGGGAAGTTTAAATTACAAGGAATGGCACTGTTATCTCCAAACATGGAAATAACTGAATACTAAATAATTGTATGGCTTCTTAAAAGATGGCATTATACGGAGAAAAATGTAAAGAGTATTTAGTTTGCAAATACAGTTCTTGATATTTACCTTCCAAACTGACATACCAGTAAGTTAACTATGCTgaattttcattattttgtgaATTACTTTGACTTGTGTTTAATGACTTGACTCTCTTCCCATGTTCTGTTAGTATTCAGTGGTTTCTAGTCAGCTGATGTACAAAGTGTATAAATTCTTATATTGTTTAAAGtggtcatattatgcttttccccTTACCTTtatttgtgttatatatctttgttgtgcatgttataggtttacaaagtgaaaaagcccaaagtccaccccaaaggcacttaccatctccaacagaatgCACAGTTCACAGACTcaactgtagtccagcctttacttccgtgacaaacgtgagcaactttgtaacacacgttataatgctcgccaatgtgctagcgtggcacgccaaaatactctgct

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157998 lncRNA upstream 26714 23493106 ~ 23566317 (+) True G117228
TU157988 lncRNA upstream 73262 23468620 ~ 23519769 (+) False G117220
TU157987 lncRNA upstream 78946 23468620 ~ 23514085 (+) True G117220
TU157990 lncRNA upstream 119347 23472547 ~ 23473684 (+) True G117221
TU157984 lncRNA upstream 130731 23446351 ~ 23462300 (+) True G117219
TU158087 lncRNA downstream 60736 23742484 ~ 23745977 (+) True G117297
TU158126 lncRNA downstream 166939 23848687 ~ 23848946 (+) True G117315
TU158131 lncRNA downstream 174381 23856129 ~ 23856531 (+) True G117320
TU158159 lncRNA downstream 215495 23897243 ~ 23897646 (+) True G117344
TU158161 lncRNA downstream 216902 23898650 ~ 23898912 (+) True G117346
XM_039815258.1 mRNA upstream 125220 23441591 ~ 23467811 (+) True bcl2b
XM_039815252.1 mRNA upstream 152188 23433625 ~ 23440843 (+) True kdsr
XM_039816495.1 mRNA upstream 159657 23422716 ~ 23433374 (+) True vps4b
XM_039816496.1 mRNA upstream 159657 23425370 ~ 23433374 (+) False vps4b
XM_039817029.1 mRNA upstream 249136 23325303 ~ 23343895 (+) False LOC120569134
XM_039815907.1 mRNA downstream 134292 23816040 ~ 23820441 (+) True glula
XM_039815576.1 mRNA downstream 188303 23870051 ~ 23890968 (+) True gigyf2
XM_039815573.1 mRNA downstream 189458 23871206 ~ 23890968 (+) False gigyf2
XM_039815574.1 mRNA downstream 189458 23871206 ~ 23890968 (+) False gigyf2
XM_039815575.1 mRNA downstream 189458 23871206 ~ 23890968 (+) False gigyf2
XR_005640697.1 other upstream 914300 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 980622 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1695640 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2677743 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 3217398 20373235 ~ 20375633 (+) True LOC120567833
TU158130 other downstream 169131 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 186506 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 224122 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 230916 23912664 ~ 23914498 (+) True hes6
TU158239 other downstream 340693 24022441 ~ 24023659 (+) True G117400

Expression Profile