RNA id: TU158109


Basic Information

Item Value
RNA id TU158109
length 3040
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G117311
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23815891 ~ 23819966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagttttaaatGCATCAATAAAAAACACCAGGTCCAGTAAACATCTTTTACCAAATCAGGTGCATTACAATATTGCAGTTAACAAAAGGATAAAACTCCTTGAGGAAAATCTACAAATGGCATTATGGACAGATCCACCACATTTGGACAACATAAGTCTGGGTACAGACATCTACAAATGTACCATACAAGATGACCCAGTGTGTCGAAAACTGAAGACATCAAACATTGCCATTTAAAATATAGACACTTCGTATATCAAGAGTTAGTAATATTGAAGACTGGATAATTAAAAATGCAGGTCAACATATTAACAGTACATGAACTAGTCAGATTTATGATTAAGTTACACATGCTGTCCAGCCTTAGCAGCTCTACTCTTCAGCATCCATATGCTTTAGTTCATTTTAGTCAAACAGAAAAGGGAAAGATATGACATGGGCTATAAAACAGTGTTACAAAAGCCACTCCCTTCTAAAGAAGAGGGGAAAGACATACCCTGCCATTACCAGCGCATATCTACCAAGGAAATTTCCTTGTCACATTTTAAGTTGACCAGCCAACTTTAAGCCATTAAAATGGAGGTTAAATCATCtcagaaggagagaaaaaataaaaatacagtactAGTTTAAAGAAAAGATAAGTCGTGAGGGCAGTGGAAGAGAGTCACTGAGTTGTGGATTTAGTAATCCGTAGGTTCATCTCCCTCCTCGTTCAGCAAACAGGTGCGGATCAGGGCCTCGGTCACACTGTACGGGTCACAGTTGGCCGATGGGCGACGGTCCTCGAAGTAGCCCTTCTTCTCCTGGCCGACGTTACGAGGAATGCGGATGCTGGCGCCACGGTTGGCCACGCCTGCGGAGAATTCGTTGATGTTTGAGGTTTCATGATGGCCGGTGAGACGGCGGGCGTTGTCGAGCCCCCCTTTGGGATCATAGGAACGGATGTGATAGCTGTGCCTCTTCCCAAGCTTCTCAATGGAATCTTCAATGGCTTTTAATCCACCTTCTTCCCTCATCTCTTTTGTGCTGAAGTTTGTATGGCAGCCAGCACCGTTCCAGTTGCCCGTGATTGGCTTGGGGTCAAATGAGGCAACAACGCCAAAATCTTCACAGACACGGTGCAGGATGAAGCGTGCCACCCAGAGATGATCACCCATGTTGATCCCTTCACAAGGTCCAACCTGGAACTCCCACTGAAAATGCAAAAGTTTATTATAAAAATCAAATTTTTAACTGGCTGTTAACACCATAAAAATGTCTAAAGTCCAAATGTGGATTAGGATTTCATCTTTACCTGAGCAGGCATCACTTCTGCATTTGTGCCACAGATATCAACTCCAGCATACAGGCAGGCTCTGTAATGGGCCTCCACTATATCTCTGCCATAGGCTTTGTCAGCTCCCACACCACAGTAGTATGGACCTTGTGGTCCAGGGAAACCATTAGATGGCCAGCCAAAAGGGTGTCCGTCTGTGCCCAGAATGGTATACTCCTGCTCCATGCCAAACCAAGGATGCTGGTCCTCCACCATCGCCATCACCTTGCTGCATGTGAGTCGAAGGTTAGTTTGCAGGTTTGCGGTTGTACTTGAGCACTTCACACAGGACCAGCTTGTTAGGGTCTTTACGGAATGGATCCCGGAACATGGCAGCAGGAATCAGATACATGTCGCTGTTGGAGCCCTCACACTGGTAGGTACTGGAGCCATCGAAGTTCCACTCTGGTAGATCTACAAGAGTCAGAAGAGGACAAGGGACGCTATATTATACTGTAGGACTTAGCATCTTTACGAACGTTTCAGGAGGTTTCAGGAGCCGCTTACCTTCGATGCTTTTGGGCTCAAAATCCAGCGTCCTGGTTTTGCAGCGTAGCCCCTCTCCGGTTCCATCAATCCAAATATACATGGCTTGGACTTTATCCCCCTGAGAAAGCTCCATGTACTGCTGCTTGACAGCTTTACTCAATGTGGCGCTGGCAGACGTGGCCATCTTATTTCCTACTATAACACACCTGATAAGCaaagcagaggagaggagatgagatCTCGGTTCGCTCTGGATCACAAGTgctaaacgttttttttttttaaagggggtaggggtgggggtggcgcaaaaaagcaacacaaaaacGACACCATTGTCGCCTCTTCCAGAAAGGAGGAGGGGTGAAAAACGCGTTGAGGATGTAAAAGAAGGCACAATTCCAGTCTTTTCCCCCCCTTTCCAGCTTGGAAACAAAGGGAAAAGCAAAAGCCACTTTCCACCGCATGTGCATGACCATTACGATTGAATTGAACAAGGCAGATTGCCAGCTCACAAAGGATACCTCATGGAAAAACCACATTACAAGGCAACAATCGCGACTTCAGAAAAACGCATCTTTACTGTACATCCTGTTGCCAGTACGCCTGTAGTCATAGTTACAATAGTTGGCTGCCACAGTGAAGCAATATTACATCATTGGCTTCCACGTTGTAATCCATCACCTCGCCTACTATCTACAACcttatgcaaacacacaaaacgtacacataacatccaaaacagactaaataaaatgttggatcCACTTAAGCGAAATAAATGCCCATAAATGTAAGAGTTAATTGTCTAAAGTAGCCTATGGTAGTGTACACGTAACGCTATCGTTACAATGAGTAGACTTCTGAGCTGCTCCTGCCCCACCAtgattaagtttaaaaaagcagGGAAAAGAAGTCAAATTACCTGGATAAACGCGAAAATCGAAATAAAAACTAAAGGACGGACAGGTCCGATGTCTTGTCGTCTGTTGCACCGCTAGTGTCTCTCTCATTATCTGGTACCCAGTCTGCGCCGATCCGTGCACATTTATAAGAGCAGGAACTGGGACGTCGCGTCTTTGATAGGTCGGAGAGACGGCAGCGTGTTGGTGATTGAAGCCATGTAGCTCGATCATTGGACAGGCTGCAAAACAAACGGAGCCTGCAACGCCCTCTTGCAGGAGCTCAGCTTAGCCGCGTGCTGCCAGTGTCAGACCTATGGTGACCATCc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158097 lncRNA downstream 29418 23786090 ~ 23786473 (-) True G117302
TU158045 lncRNA downstream 353595 23446358 ~ 23462296 (-) True G117265
TU157960 lncRNA downstream 466707 23345770 ~ 23349184 (-) True LOC120569135
TU157969 lncRNA downstream 473968 23341354 ~ 23341923 (-) True G117206
TU157968 lncRNA downstream 474576 23339536 ~ 23341315 (-) False G117205
TU158135 lncRNA upstream 22280 23842246 ~ 23843595 (-) True G117324
XR_005640816.1 lncRNA upstream 23865 23843831 ~ 23849958 (-) True LOC120568991
TU158140 lncRNA upstream 31348 23851314 ~ 23851862 (-) False LOC120568990
TU158149 lncRNA upstream 66498 23886464 ~ 23888799 (-) True G117337
TU158156 lncRNA upstream 74193 23894159 ~ 23895101 (-) True G117341
XM_039816315.1 mRNA downstream 29850 23736978 ~ 23786041 (-) False LOC120568659
XM_039816313.1 mRNA downstream 29850 23736978 ~ 23786041 (-) False LOC120568659
XM_039816314.1 mRNA downstream 29850 23736978 ~ 23786041 (-) False LOC120568659
XM_039816312.1 mRNA downstream 29850 23736978 ~ 23786041 (-) True LOC120568659
XM_039817010.1 mRNA downstream 81507 23725487 ~ 23734384 (-) True prtfdc1b
XM_039816770.1 mRNA upstream 31107 23851073 ~ 23856621 (-) True LOC120568990
XM_039816483.1 mRNA upstream 41205 23861171 ~ 23865766 (-) True kncn
XM_039814877.1 mRNA upstream 85880 23905846 ~ 23912764 (-) True itm2cb
XM_039814874.1 mRNA upstream 96775 23916741 ~ 23933804 (-) False per2
XM_039814868.1 mRNA upstream 96775 23916741 ~ 23933804 (-) False per2
XR_005640657.1 other downstream 324279 23468620 ~ 23491612 (-) False LOC120568062
TU158039 other downstream 384899 23430366 ~ 23430992 (-) True G117259
TU157659 other downstream 1547332 22263123 ~ 22268559 (-) True G116969
TU157655 other downstream 1552393 22261998 ~ 22263498 (-) False G116969
TU157096 other downstream 2805322 21008049 ~ 21010569 (-) False higd1a
unassigned_transcript_560 other upstream 47986 23867952 ~ 23868025 (-) True trnai-aau_23
unassigned_transcript_562 other upstream 49189 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640840.1 other upstream 200396 24020362 ~ 24020438 (-) True LOC120569137
XR_005640841.1 other upstream 201473 24021439 ~ 24021501 (-) True LOC120569138
TU158445 other upstream 679414 24499380 ~ 24536496 (-) True G117560

Expression Profile