RNA id: TU158170


Basic Information

Item Value
RNA id TU158170
length 293
lncRNA type sense_over
GC content 0.50
exon number 2
gene id G117355
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23910522 ~ 23915931 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCCTGAGGTATAATGATCTTGTCTCCATCGATCTCTTTTTCGGGCTTCTGCGCCGAAACTGTCTGGAAAGTGATCTTCaccatgtttgcttgttcagtGTATGTTTGCTTTATCTCGTTAGCTGATTTGGTGCGCTGGTTTCTTCCACCGAGCAGGGAAGATTATATAGCGGCGGACCAGTCTCGCCCCCGGGGCTCAGTGACCTCAGTAGAGCGTCTTCTCTGACGAACGAGCACAGTGTGGGTCTGAAGGAAAAGCCGCCTCGCCGCTGTCAAAttttacttttaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158161 lncRNA upstream 11610 23898650 ~ 23898912 (+) True G117346
TU158159 lncRNA upstream 12876 23897243 ~ 23897646 (+) True G117344
TU158131 lncRNA upstream 53991 23856129 ~ 23856531 (+) True G117320
TU158126 lncRNA upstream 61576 23848687 ~ 23848946 (+) True G117315
TU158087 lncRNA upstream 164545 23742484 ~ 23745977 (+) True G117297
TU158175 lncRNA downstream 827 23916758 ~ 23920029 (+) True G117359
TU158177 lncRNA downstream 827 23916758 ~ 23919254 (+) False G117359
TU158185 lncRNA downstream 13917 23929848 ~ 23933807 (+) True G117364
TU158203 lncRNA downstream 31995 23947926 ~ 23948202 (+) True G117374
TU158217 lncRNA downstream 66260 23982191 ~ 23982983 (+) True G117385
XM_039814875.1 mRNA upstream 4993 23899208 ~ 23905529 (+) True LOC120567818
XM_039814876.1 mRNA upstream 4993 23900140 ~ 23905529 (+) False LOC120567818
XM_039815581.1 mRNA upstream 13611 23891144 ~ 23896911 (+) True snorc
XM_039815578.1 mRNA upstream 19554 23871206 ~ 23890968 (+) False gigyf2
XM_039815142.1 mRNA downstream 48018 23963949 ~ 24005011 (+) True clcn2a
XM_039815140.1 mRNA downstream 52237 23968168 ~ 24005011 (+) False clcn2a
XM_039815138.1 mRNA downstream 52238 23968169 ~ 24005011 (+) False clcn2a
XM_039815139.1 mRNA downstream 52238 23968169 ~ 24005011 (+) False clcn2a
XM_039815141.1 mRNA downstream 52238 23968169 ~ 24005011 (+) False clcn2a
TU158168 other upstream 2121 23905870 ~ 23908401 (+) True G117353
unassigned_transcript_561 other upstream 42197 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 55365 23850879 ~ 23855157 (+) True G117319
TU158062 other upstream 224718 23677079 ~ 23685804 (+) True LOC120567964
XR_005640697.1 other upstream 1231791 22641510 ~ 22678731 (+) False LOC120568311
TU158239 other downstream 106510 24022441 ~ 24023659 (+) True G117400
XR_005640839.1 other downstream 133833 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 133833 24049764 ~ 24054704 (+) False LOC120569114
TU158470 other downstream 751962 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 757993 24673924 ~ 24675753 (+) False LOC120569045

Expression Profile