RNA id: TU158201


Basic Information

Item Value
RNA id TU158201
length 570
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G117372
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23940225 ~ 23940794 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccccactaatgattcatttatttctgcatgtatttatttatttaacgagactttaagtcgtgtttcgtcgtccacagtccgagtcccgccagactccctttaggaaacctgtgatttaaacttcagcaggctgtgacagtccgctccgttcagtcctggatctgattctcccgggcttcccttccctccagcgggcccagcaatacggcctgggtctccagctgcgtggtgtcggttttggctcccaggaatgggcagtgagctccaggtcctgcagctgcagacggactcagctgcccccctgctgtagcttcgatccggccgcggctgtcgatacgttccctgtttttccaatgtttccgtcaggtccgcgtcatataaaaactccaaacaccgaccacacgtaaagtcaccataaacttcattcacgccatatactcactcacaacaacacaaattgactgcgctcaccaacaacacctcatcacttccggtatgtggtacattccctttccgtgaagaatctgtcatttgtaaatttgtttcgggactggtaaaagtgttttgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158197 lncRNA downstream 2118 23934919 ~ 23938107 (-) True G117369
TU158158 lncRNA downstream 43314 23895975 ~ 23896911 (-) True G117343
TU158157 lncRNA downstream 44455 23895519 ~ 23895770 (-) True G117342
TU158156 lncRNA downstream 45124 23894159 ~ 23895101 (-) True G117341
TU158149 lncRNA downstream 51426 23886464 ~ 23888799 (-) True G117337
TU158367 lncRNA upstream 254513 24195307 ~ 24199562 (-) True G117501
TU158374 lncRNA upstream 268755 24209549 ~ 24212225 (-) True G117505
TU158376 lncRNA upstream 273043 24213837 ~ 24216457 (-) True G117507
TU158388 lncRNA upstream 299827 24240621 ~ 24242247 (-) True G117514
TU158437 lncRNA upstream 398288 24339082 ~ 24462553 (-) True G117553
XM_039814873.1 mRNA downstream 6421 23916741 ~ 23933804 (-) False per2
XM_039815146.1 mRNA upstream 7909 23948703 ~ 23959073 (-) True LOC120567986
XM_039815150.1 mRNA upstream 19283 23960077 ~ 23963327 (-) True thpo
XM_039815151.1 mRNA upstream 19283 23960077 ~ 23963321 (-) False thpo
XM_039815147.1 mRNA upstream 40886 23981680 ~ 23983971 (-) True LOC120567987
XM_039815149.1 mRNA upstream 65580 24006374 ~ 24012550 (-) False fam131a
unassigned_transcript_562 other downstream 70999 23869155 ~ 23869226 (-) True trnap-agg_8
unassigned_transcript_560 other downstream 72200 23867952 ~ 23868025 (-) True trnai-aau_23
XR_005640657.1 other downstream 448613 23468620 ~ 23491612 (-) False LOC120568062
TU158039 other downstream 509233 23430366 ~ 23430992 (-) True G117259
TU157659 other downstream 1671666 22263123 ~ 22268559 (-) True G116969
XR_005640840.1 other upstream 79568 24020362 ~ 24020438 (-) True LOC120569137
XR_005640841.1 other upstream 80645 24021439 ~ 24021501 (-) True LOC120569138
TU158445 other upstream 558586 24499380 ~ 24536496 (-) True G117560
TU158687 other upstream 981409 24922203 ~ 24923318 (-) True G117732
TU159298 other upstream 2720827 26661621 ~ 26665952 (-) True G118175

Expression Profile