RNA id: TU158247


Basic Information

Item Value
RNA id TU158247
length 3144
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G117405
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24036655 ~ 24043541 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGAGCATTAAAAAGGCTTTATTTGAGAAAAGTCAGGCACGTGTTGACGAAACATAGCTGATGCAATAACACAGGTAATGAAACATTAGGTTTCATCTGCATGAAAATGGCTACATGTGGACATGATTGATCACAGGATAGTTGTTTTATAAGTTGCGGTAGTGCAATGTATCCAATTGTTGGTTGTACTTCTAAAAACAGTCTACAACACAATCAGTAAGAAAATACACAATGCAATTTTTGGGTTGAGTGTGAGAAGAGTGGGTATGGTGCTCGAATTGCTGAGGGCTGAATGAGTTACAGCATGGTCTATGGTTTCCACTAGTTTTTTTGCTGGCAGGAATGGAAAGTGCAAGATTTCTCCAGATCTGTTggaaacagaaaaagacaaaaactgacTTGGGAATTTCAGAACAGGTACATATCTTTATGGTGTCTGTGATGTGTATAGAATACAAAGATACAATTTTAATGTGAATCTGTTAAATTGCGGTCCAGTTAGTCTTGATTTGGCCAACAACAGTAGTACAAACCTGGAGTGGTTTCACTGCACTTTCTGAGTGAATTTATGGAAATCATGTACTGTTCTCCCAAAAACTCTGCATATGTTTTTCCAGCTGGAACCTCCTGGAGACACTTAGTAGAGTCCTTGAAGAGGAGGTTCTTTCCTGACTCTGACTGGAACATCCTGAATGTGGCATCACTGACACTGCTACCAAACTTGGccGCTGATCCCGGAGAACGTTAACAACCTCGTTTCGGGTCTCTGGACGAGTCACCACAGCGTGGGCGGGCACGACAGCCAGATGACAAGAGGCGTAATCAGTGACTGGCACTGGATTCTTCCCAGGGCAGATCAGCCGGTAGTCAGCAGAGTTCACACCACTAGCCCATGGCGCTACATTATTGCCTTTGACAAGAAAGGTGTAAGAATGTTTGGTagctttataaaataaaaaaaaacttgtgtaTATTTGAGATGAAGACAGGCCAGTGTCAGTCTCTTACCATCACTGTTTTCTGAAACGATTGTGTGTTTGATGAAGGCAACATCGCCGGCATCCTCAACCAGACATCTATAATGATATGCAAAACATAACTTGGGCAATATGAAGATGATGTGTACTAGCCTGAGCATGGTACTCTGGAAGTGTAATTCAAAGGAAGGAAGGTttgtcatttttgaaaaaaacatttagttacTTTGCTAGATGAGAACATTGATATCACTCTCATGCCTGAGTGTTAATTAAGAGCTGGATTTGGGAGGCAGTTAGCTTAGCCTAAATAATTAGGAAACAGTTGGCCTATTAGCAGCTTTAGAGTTGCTGGAAGAACTTTAGAGAGAACCATGTTAGCTGTTTCCTTCTGCTTACAGTCTTTGTGCTAGTCTAGGTTAACAACCTCCTGGTTCAAGGTCCGTACTGAGCTCACAGACATGAGAGTAGTATTAATGTTTTCTAATtctcagaaagaaagcaaatgtgcatatttccaaaaatgtccttccttccttgaacatactgtacatgaacGTAAAATTGTATGCAGAGTAATTGCATTGTTGCGTCCTACCTAAAGGCTCCAGCATAGCCGTAGAACTGCTCTTCAGAACTCGCTTTGCACTTATACTCATCTCCCACAGCTTTGCCACTGCCACGACAATTAGTACAGAATGGAGACGTGATGTTTGCTCCGGGGGCACAGCCGCTACTGAAGAACTGGgctgaagagaggaggagacatAATGTGTTGGTGTTGCACTCAGAGGTGTTGAAAAGGCTATCATGTCTGCTAACAGTTATATTTATACACTACAGAAAGGCTTCACCACATACATTTTGGAGGAAACGTAATTTCTGCCTGGATTATGCTCTCTCACAATGTTCCCAGTCCAGGAAATGTTAGGGTATTCTACTTTACACTACAGAAGTCGTAGGGAGGTGGTCGGGGTGGATGTTGGGTATATGCAAAGTACAGAATTTAGACActttggttaaggttaaggAAAAATTTAGGTTTTAACTAAGACCACAATCttaacctaaccataaccaagtgcttcaAGTTGCCTTAACATATTACAACCATAAAGAAAAGATGTTTTAGTTGCTACAAGTGGACTTTGTAattaaatatgtaaacagtTTGCAACCTTACAGATACTGTGCGTTGAAATATTTCCTCACAATGTTGATGGACAAGATCATCTGGGCATTATGTTTCTTTCTTAAGGGAACGGACAATGCTCATGTATTCAGCACCCAAATACAGGAAGGAATCTGTGTTTGCGGGCACCTGCACCAGCTTCTGTGTTGAGTCCTTGAACATCAGATTTTTGGCAGGTGCATAGGCTTCAGAGGAGAAGAGGTTAAAGTCTGAAAGAGACTGAAGAGAAAAAGCTCATTATGTAAGCACTGAAATACATCGTAAGGGAACTAAAACATAATTGAATGAATCATTTTATATTGTGATTCACTGCATTTCTCCCTCATCTACCTTATCAGGCAACTCTACTACTCTTTGTGCAGTACAAATATTTTGTATCATACCTGTATTGAATTGAGGTTATTCCAGATTAATTGAGCCAGCTGTGGGTCCTTGCGGGTGACAACAGCATGAGCTGGTACTCTGGCCAGGTGGCATCTTTGATAATTGTCGATAGGCGCTCTGGTGTTATCCTTGCACAGCAGCTCGTAGTTGTTCTTTTCAGAGTCCAGGTACAGTAAGATGTTTCACAAAAGCCACATCTCCAGCGCCGTCCTTTAGACACCTATTAAGTAGACCAATCAACATTACAGGTTTGTTTCTGTTACCAGAGGTATAGTGTATATCCACTGGGTTTAAGAAAGcatcaaattaataaaataataaaaatgtcacaGGATTACAGACTGAGCTGTGACAGGTTATCATATTTGGAAGATACATGTGTAGAGGTTGATAAAGGAcagtaaaagtcatagtagaacTGAGAAGGATCAAAGAAAGACTGATACTAACTGGAAGGCTCCGGCGTAGTCGTAGTAAGGCTCATTGTGAGACCTGGAGCAGTCTCCTCTGCACAGCGAACACAGTTTGCTGCCCCTTGTTGCCCCCGGGACACAGCTGGCCGAAAAGAACTCGCTCACCGctgcaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158236 lncRNA upstream 15836 24019654 ~ 24021055 (+) True G117398
TU158217 lncRNA upstream 53908 23982191 ~ 23982983 (+) True G117385
TU158203 lncRNA upstream 88689 23947926 ~ 23948202 (+) True G117374
TU158185 lncRNA upstream 103084 23929848 ~ 23933807 (+) True G117364
TU158177 lncRNA upstream 117637 23916758 ~ 23919254 (+) False G117359
TU158250 lncRNA downstream 1947 24043969 ~ 24044484 (+) True G117406
TU158223 lncRNA downstream 31865 24073887 ~ 24075315 (+) True G117389
TU158338 lncRNA downstream 108436 24150458 ~ 24150771 (+) True G117476
TU158349 lncRNA downstream 122832 24164854 ~ 24169555 (+) True G117487
TU158350 lncRNA downstream 127646 24169668 ~ 24169953 (+) True G117488
XM_039815138.1 mRNA upstream 31880 23968169 ~ 24005011 (+) False clcn2a
XM_039816993.1 mRNA downstream 10330 24052352 ~ 24054704 (+) True LOC120569114
XM_039816224.1 mRNA downstream 12757 24054779 ~ 24057075 (+) True LOC120568612
XM_039816945.1 mRNA downstream 41674 24083696 ~ 24089942 (+) True LOC120569088
XM_039815960.1 mRNA downstream 96133 24138155 ~ 24142097 (+) False cdc20
XM_039815959.1 mRNA downstream 96144 24138166 ~ 24142097 (+) True cdc20
TU158239 other upstream 13232 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 122393 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 128490 23905870 ~ 23908401 (+) True G117353
unassigned_transcript_561 other upstream 168566 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158130 other upstream 181734 23850879 ~ 23855157 (+) True G117319
XR_005640839.1 other downstream 7742 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other downstream 7742 24049764 ~ 24054704 (+) False LOC120569114
TU158470 other downstream 625871 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 631902 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 908546 24950568 ~ 24954247 (+) True G117664

Expression Profile