RNA id: TU158350


Basic Information

Item Value
RNA id TU158350
length 286
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G117488
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24169668 ~ 24169953 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGggtaaaaaacacatttgtctcTCAGACTTTGGTAGGATTTGTGTGGAATATGCACTCTGTAACTCTAACTGTTGTGTCACAGCTATCAGGATCAACAGAAAGTGCCCCTCTCTGCGTCTGGCTGGGTAAATAATTACACCACTGGTAAATAATTGGGACTCTGTGTTATCCTCTTACTGGCCTTTGCACTAGACTGAACACTCAAAATTGACTCAaacagagcaggaggaggagctggggagggatagacagaaagagaggggcATGTAAATAAAAGTTTATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158349 lncRNA upstream 113 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 18897 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 94353 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 125184 24043969 ~ 24044484 (+) True G117406
TU158246 lncRNA upstream 126127 24036891 ~ 24043541 (+) False G117405
TU158403 lncRNA downstream 87601 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 167740 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 386466 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 399625 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 668003 24837956 ~ 24838229 (+) True G117632
XM_039816710.1 mRNA upstream 9329 24152160 ~ 24160339 (+) True bokb
XM_039815960.1 mRNA upstream 27571 24138155 ~ 24142097 (+) False cdc20
XM_039815959.1 mRNA upstream 27571 24138166 ~ 24142097 (+) True cdc20
XM_039815961.1 mRNA upstream 27571 24138166 ~ 24142097 (+) False cdc20
XM_039816945.1 mRNA upstream 79726 24083696 ~ 24089942 (+) True LOC120569088
XM_039816226.1 mRNA downstream 1092 24171045 ~ 24197651 (+) True kif1ab
XM_039816810.1 mRNA downstream 30290 24200243 ~ 24209452 (+) False espnlb
XM_039816815.1 mRNA downstream 30290 24200243 ~ 24209452 (+) False espnlb
XM_039816814.1 mRNA downstream 30290 24200243 ~ 24209452 (+) False espnlb
XM_039816812.1 mRNA downstream 30290 24200243 ~ 24209452 (+) False espnlb
XR_005640839.1 other upstream 114964 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 114964 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 146009 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 255170 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 261267 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 497940 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 503971 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 780615 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1585140 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1605938 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile