RNA id: XM_039816862.1


Basic Information

Item Value
RNA id XM_039816862.1
length 1779
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120569045
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24667879 ~ 24675754 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaataaacaagaagaaggaggaggaggacgttATTCTGTGGAAGATCATCTTTGGAGAAAGTAACGTTACGTGCAGACTCACTCAGGAAGAGGACACAATCACATTTCTGAACCTAGCTAACATAACTGATAAAGCCTGAATGGATCTTACCGAACAGATCAACCAGTTGGAGGCAGATTTGCTGGAGCTGGGGTCACTCCTGGAGAaggcagagaggaaaagagTGCAGGAGCTGCTAAAGCAGGAGCAGCAGAAGGTGGAGAAGGAGCTTTCAGTCAAACGACAACAGAAGGAGAAACAAGCCATGAGAGAAGCAGACCGACCTCTTGCCTCTAAAGGAGCGTACACAGTCAAGATCAACAGCTATGATGTGAAATTCGAGAAATGTGAGCATTTCGTAGTCCTTTTCTTGCCCACTGCTGAATTCAGGCTCAGTGTTGACTTGCATTGTACCCTTGGTTCAATCTGCTTACTTCTGGTAGAAAATAGAGCAACTGATTCTTGTGACCGTCTTTTCTCCCTTCAACAGATAAAAACAGACATGATCCTGGTCATGTGCAAGAAACAGGCAACAAAGAAGTGGGAGTGCCTAACAACAGTGGAAAAGCAGTCAAAAGAGAAAGATAAGCCCAATATTGATGAGAGTGCAGACCCCAGCGATGGACTGATGACCATGCTGAAGAAGATTTACTCGGAGGGAGACGACGAGATGAAGAGAACCATCAACAAAGCCTGGTCAGAGTCCCAAGAGAAGAAAAttcgaggaggaggagaagacatGATGGACATCTGAACTGCCCTCGCTGCGTGTCCACCTGACATGACTTGAATATGAAATGTTACGTGGACATTTCCACAAAATCTATAAATTCAGTGTACAGCTCATATATAAAGGTTCAGGATTAATGTCTAAGCCCCGGAAGGCCTCATTTTGACCATGCTTTGAAAATCAGGCTGCCGATGTCCTGATAGTCATAGACCATGAAGGCTCGGAAAATATGTGTACGAGCATAATGGCAGTGTCCAGCAGATGGCAACCTAACagcaaaatatatacacatttcatcacctttttttttttgtaatgtcaGATTTGATGGGTTAAAGGACCACAatgcagttgtttttttcttgagaTTAATGTCCATTAGTAATTCATAGTTCAAATTGGACCTGGGTAAATTTAATATGTGAGACGTGTTCTGTAAAGTCACATGTTAATATTGTTCCTTTGCAGAATTCAGTGCAGCTAAACTAAGCTGATATTTAAGATGTTTCCAAGTGTACATTTGCCAAAGTCATGCTCATATTCCTTTAACGAAGAGAACCAAAGGGCTCTTCTGGCTTCTCTTCTGGCGTCTTCATATCAGctgtttttggggggttttcttTTGTCATTCCATAAATTGCTCAAATGATAGCTGCAAAGACAGCACTGCTCACGCATCAGTCCAGTGTAATAATTCACATTACTGCATAGGTCTGTGTTTGACAGATTTAATGTATTTTACCCATTCCTGTTGGCATAGCTTAATGCTCTGAAACACTTTCTTTGTAATTCTTTAATATGACTGTTAGATTTTCATTGTGTTGGACAGTTTCCCACTATAATTTCTATTTACAGCACTGTTGAAGTTGCCCATTTCCCTCCAGCTTTTGGGAATAtctaaaatgtatgtttaattATGTTGATTTTTTACCCTGGCTTTTGTCATTGTCTTACATGTATTGTTGTCTGCCCTCAAACAAGTTCTCACAAATATAGATCTTGAACTGAT

Function

GO: NA

KEGG:

id description
K04507 CACYBP, SIP; calcyclin binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158430 lncRNA upstream 91877 24569578 ~ 24576002 (+) False LOC120568789
TU158431 lncRNA upstream 111222 24556419 ~ 24556657 (+) True G117547
XR_005640665.1 lncRNA upstream 328623 24337693 ~ 24339256 (+) True LOC120568139
TU158403 lncRNA upstream 409048 24257554 ~ 24258831 (+) True G117523
TU158350 lncRNA upstream 497926 24169668 ~ 24169953 (+) True G117488
TU158539 lncRNA downstream 162202 24837956 ~ 24838229 (+) True G117632
TU158548 lncRNA downstream 187273 24863027 ~ 24870087 (+) True selenot1a
TU158596 lncRNA downstream 311745 24987499 ~ 25043945 (+) False fgf12a
TU158635 lncRNA downstream 442477 25118231 ~ 25118502 (+) True G117704
XR_005640686.1 lncRNA downstream 450077 25125831 ~ 25130929 (+) True LOC120568228
XM_039814561.1 mRNA upstream 5815 24660132 ~ 24662064 (+) True mrps14
XM_039816494.1 mRNA upstream 89567 24569528 ~ 24578312 (+) True LOC120568789
XM_039815428.1 mRNA upstream 122119 24376892 ~ 24545760 (+) False tnr
XM_039816487.1 mRNA downstream 1229 24676983 ~ 24685579 (+) True plk3
XM_039816559.1 mRNA downstream 83411 24759165 ~ 24797248 (+) True eif2b3
XM_039816633.1 mRNA downstream 132490 24808244 ~ 24837694 (+) True ptch2
XM_039815582.1 mRNA downstream 178040 24853794 ~ 24861945 (+) True kif2c
XM_039815583.1 mRNA downstream 178040 24853794 ~ 24861945 (+) False kif2c
XR_005640839.1 other upstream 613175 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 613175 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 644220 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 753381 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 759478 23905870 ~ 23908401 (+) True G117353
TU158583 other downstream 274814 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1079339 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1100137 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 1154301 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 1539973 26215727 ~ 26217041 (+) True LOC120568800

Expression Profile