RNA id: XM_039815417.1


Basic Information

Item Value
RNA id XM_039815417.1
length 4067
RNA type mRNA
GC content 0.44
exon number 6
gene id fgf12a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24987499 ~ 25044057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCAGCCACGCACGAGCGCCTCGTGCATGAATTTAGGTTGATGCGAATTATTAAAAGGCGCCTGGAAGCCAGAGGAGAGGCTGGTGTGCAGATGAGGATTAATAAATCGTGCTCGTCAAACGCGGCGCTGTTCACCTGGAATACCTGAAGCGTTCCAATGACACCCAGCTGCGTCAACTTATCAACACTGTTGCATGTTTTCACTGCTGACATGTCGGCCCCTGTGGCCTAGCCCGTAGAtttatgttttatgtcagaCCGGTCGCTGTTGATTCGAAGCCCTGAGTGTCCGAAAGTCGCGGCAGCTGAATTACGTTACTGTCCCCTCAAGAGGATGCTGCCTGAAGCGCAATGATGCCCGGGACTCGGAGGGTTTTCTGATCAGGATGACATTTGGTTGAACACACTCGTGGACGTGAAACACAGAATCAactctcgttttttttttttttttgagccaAGAAGCTGCACCAAGATCCGACCTCTGCCGAACTAGACTCTCGGTTTTCAGACTCGGTTCGGGGAGATGGCCGCAATCGCCAGCTCCCTGATCCGGCAGAAACGCCAGGCGAGGGAGTCGAACAGCGACCGGGTCTCTACTTCGAAACGTCGCCCCAGCCCCAGCAAAGACCCCCGCTCTATCTGCGAGAGGCATTTCTTGGGGGTCTTCAGCAAAGTCCGATTCTGCAGCGGCAAGAAAAGACCCGTTCGGCGGCGACCAGATGCACCCTCGAAACCTCCACAGGTGTCCCATAAGGGCTGCAGGCTAGAGCCGCAGCTGAAAGGCATCGTGACACGGCTGTTCAGCCAGCAGGGCTTCTACCTGCAGATGCAGCCGGATGGAACCATCGACGGCAGCAAGGATGAGAACAGCGACAACACTCTGTTTAATCTTATTCCTGTGGGTCTAAGAGTGGTGGCCATCCAGGGAGTGAAGAGTGGCTTCTACATTGCCATGAATGGCGAGGGCATGCTCTACAGCTCGGAAATGTTCACACCAGAGTGCAAGTTCAAGGAGTCTGTTTTCGAGAACTACTACGTGATCTACTCGTCCACTGTGTACCGACAGCAGGAGTCGGGCCGGGCCTGGTTCCTTGGCCTCACCAAGGAGGGACAAGTCATGAAGGGCAACCGGGTCAAGAAGACTAAGCCCTCGTCACACTTTGTGCCCAGGCCCATCGAAGTTTGTATGTACAGGGAGCCGTCAATGCATGAGATAGAGGACAAGCACCGCTCCAGGAAGAGCTCAGGGACTCCCACCATGAACGGAGGGAAAGCTGTCAATCAGGACTCCACATAGCAGCGGAGGGAGGggcttccagcaggggggagtgATCTCATCCTGACTCAAGGGGCGGGGCCATAGGAAAACTCATCGCCCCCCCCTAAAATACGCACCACCATCCcctctgaaaaaaaagaaggcgtTGTGGCGATGAGGAGCTATTACTGTACACCcaagacaacaaaaacaaaactgaacTCTTGCCTGTGAAAATCTTTTAGATGAATTAATATGAAACCAgaggagatatatatatatatatatggagaaaaaaacattttcaatcaGGACTTGACCAACATTTTATGCAAAAGAGAACAAGCTGTGATAAACAAAAGAATGGTGGTCTCTCTTCACGCAAATACAAATATCTATCATTTCCAATTTATGCTGTGAAAAACAAGCTTTAATACATCTTTTCTAAATGCTACTGCACTCCCATatgctttattgtgttattgttgtcagtaataactataacatcatcatcattactAATCTGTTGAATCTTATCATCCCAGTTAATATCATGGTTACaggctttcttttgtttttgggaCTAGAGATTTGTTTTCCAATTTCTCTCTCATAGTTTGATCCTGAATGCACTGTCACACTACCTGCTCTGTTGTGAGGGTAAGACAGAATGTATTTGATAGTTCTCTGTGTTGTACTCCAATGGAAACAGAGTGCTTAGGGCGGGATGTAATTTACTCAGGTGTGTACTGTAAGTGTGACTAAAAGGACAGACAGGGCTGTTTCAAGTACTCTAACATGAAGTCCCCTATATTGTTCTGCAATGACGGGACAAGACTGATTCAAGCAATATAATAGAAAACAGTCTAGTATGTCTCTAAACAATAGTGATGCCAAGCTGACAACACATCCCTGTGGTTGGTGTGTTTGTCAGTAGAGAAGACTGGCAAATAAAGTTGTACAAGTAGGTAAAAGTTGGTGTCAAAGTAAAACTGTCTTGATATCCATTCAATATAGTATTTAAAATTTGCAAAGATTATTAGGTTTTTAAGTAAAAAGATGTCCAAACTTGTCACAAATGGCAAAGAATAGCATTCTCTCCAAAACAACCAGCATCAGCACTATGAGCCATGGCCAAAATAAAATGGCCACTTCACATATACACCTCAAGAAACACAGACCCCTCTCTCTGCTGTTAGCTAGGCTAAAGACATAACCATATAACAGTATTCATGCCTTTAAACTATATGGACAAAAGActtctgctgtttttttctaaGCAAGAGAAGAATGACAGTTGTTTTGGCAGACCCAGCAGTTGTTGACTAGTTTTAAAGACTATTTCTgttacttttattgtgaaaacatTAGAGATTTCTCAACACTGGTGGACAAGGTGCCTGACTGACTGTTTAATAACCTACTGACCTGACTTGTTGATGTTTTCAATATATGGTCACAATCATTAAGACTTTCCCATCACAATGGAAGCAGAATGTCTCATTGAGGAACCAGTTCGTCTGGATTTAGCCAGGTTTGGGGAGGATGTCCTACCATCCCAGTGGGAGTATCTCACCAAACTCATACAGTCTCCATCCCACCTGGTTTTGTGACCCATGAAATGAGCCATTTGCTGCATTGTGGAGGAAATCTTCTCTTTCATAAATCAACATGCTGACAGGGCTGTTTAAACAAGGTGAATTGACTGGTACACCGCATACACCGTGTAGGCTGAATAGCTCATTCCCAATCCCCAATTAGTTTGACTAACTCAGGAAGTCCTACAATTGTTCCGCGAATGGGGCCAGACATAAAAGGCTGGCCGCTCGTTTGTCCAGCACCTGTTGCACAAAGCTTGGCCACCGGTGTGGTGTTTAAGGAGATCGGGATGGAGTCGATGGTGGGGTTTTTTTCCATTAAAAAAGGTATTGTACAGCTAAGCCTAGCCAGGTAAGGAAGGTTGTAAAGGGGATTACAGGAGCCGAGATGAAGCATGAACATAGCATGAATAAGAGTTGATGTAAGCTTGGTTCAATTTTGAGGCGAGAGATTGTTTTAAATTTGGGGAGAATATGTCcaaaacttttttatgcaacGTTTTGCAATGTTTTGATCAGTATTTTAGCAAGAGTTTATACAACTCTCCTATATCTGGTTGGAAATCATATGCTAAATTGATGGTATGTACAGTAAATAGCACACATTCAGTTGCACGGAGCAAACCGCAGTGGTATATTATCATGGATCTGGTGTCGTAATTGGGGCCTGGGTTAATAGCTGGTGCAAGTTACCTGTGAGAGCTAACGGTAGATTAGTTCAACTTCCACAGCACCTACAGCAttgatacatacagtatatcagacGTGACACTGAAAGTCAAAAGGCAAGACCAGCATATAGAAGTATCTTTTTATAGAGGTTTATATTGGTGCAAATGGAATACATGTGGACTTAAAGCAATGCATGAAATTGGATGTACTCAATGTCAACTGTTGACGGCAGAATGAGAGGATTTGAGAAAgggatgaataaataaaggagGTAAAAATAGCTGATGTGAGAGAAGAATAGCACTTTTCGGGGGGGTTATTGATGTCTGAAAGGGTGAGCAAAGGCGTTGGTTGTATGTGATATTaagtattatttattatttttatgtttgcaGATGATTTCACTGCACTGGAACACACTCATATATGCATTATGAATTGTgagatgaaataataaaaaaaaaatatgcattgATAATAAAAATCTGAATGAAGTTAGTGATTGTTTAAGAATAAAGACTATGTTATCAAAAA

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158548 lncRNA upstream 150375 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 182233 24837956 ~ 24838229 (+) True G117632
TU158430 lncRNA upstream 444460 24569578 ~ 24576002 (+) False LOC120568789
TU158431 lncRNA upstream 463805 24556419 ~ 24556657 (+) True G117547
XR_005640665.1 lncRNA upstream 681206 24337693 ~ 24339256 (+) True LOC120568139
TU158635 lncRNA downstream 74174 25118231 ~ 25118502 (+) True G117704
XR_005640686.1 lncRNA downstream 81774 25125831 ~ 25130929 (+) True LOC120568228
TU158801 lncRNA downstream 705378 25749435 ~ 25749788 (+) False LOC120568894
TU158810 lncRNA downstream 731834 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA downstream 738118 25782175 ~ 25793191 (+) True LOC120568901
XM_039815415.1 mRNA upstream 24260 24992144 ~ 24996202 (+) True extl2
XM_039815409.1 mRNA upstream 39582 24965665 ~ 24980880 (+) True rc3h1b
XM_039815411.1 mRNA upstream 39582 24965665 ~ 24980880 (+) False rc3h1b
XM_039815410.1 mRNA upstream 39856 24965665 ~ 24980606 (+) False rc3h1b
XM_039815412.1 mRNA upstream 80583 24936959 ~ 24939879 (+) True LOC120568131
XM_039815404.1 mRNA downstream 41917 25085974 ~ 25113802 (+) True LOC120568127
XM_039815596.1 mRNA downstream 96680 25140737 ~ 25262341 (+) False gpc5c
XM_039815593.1 mRNA downstream 109109 25153166 ~ 25262341 (+) True gpc5c
XM_039815594.1 mRNA downstream 109109 25153166 ~ 25262341 (+) False gpc5c
XM_039815908.1 mRNA downstream 237247 25281304 ~ 25353783 (+) True LOC120568394
TU158583 other upstream 66215 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 344709 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 344709 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 965758 24049764 ~ 24054704 (+) False LOC120569114
TU158802 other downstream 711036 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 731834 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 785998 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 1171670 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 1351369 26395426 ~ 26402078 (+) True G118011

Expression Profile