RNA id: TU158657


Basic Information

Item Value
RNA id TU158657
length 1354
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G117716
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24863009 ~ 24868431 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAAAAGCTCCTGTAGACATACACTGGTTTTCAATCATATTGCTGAAGAAGAACACCATCATGCAGGCATATATCTGAAAgaaaaaagttaaagttaaaaaagttccgcacaaaaactattaaacaaaatttattttttaactggcagttatgtttgtgtttcttgCATTGTGCTCACTCAATGAATCACGAGAGTGGTGCACTGAAAAGATACTGTTTAAGTATTAAGACCCGCAGGATGAATGTGGTCCTCTATTGAAAAGGTTAACATGAAGCTGCTTTAGGACACCTTGAAGTGATGGGCAACAACTCCAGGTGAGGTTCAGGCATATTTAATAATGCATTTTTGGTTAAACACAGATCTGGTAGTACAATTCAAGgtcacttgtaaaaattatatTCGTTTGTCAGGATTAGCAAAATAAGTTCAAGCCAAATGCTTATTAAGTCTCTATTCTGTATGCAACTGTAAGTTTTTTCTGATAGTCATCCATTTGGCTACCAAAACcccattacattttatcagcctCAGCTTTCGGTTCTTTTTGTTTGATTGGAAAACATCTGATGTTAGCAGGTATTAGCCATTCTCCCTCTAAGCCTTTGggttgtctaactctggggataACCAATCCAAGCAAAACAATACCTAAAAACACAACCTGAATACTCCGAATGAGCTAATTAAACCCCAGGGGTTTGAGTTGTGCTCGTCATTTTGTGTATGTACAACTGAATTAGAAACACAGCCAAACTAACGCCCACTTTCCTCCACTTATAAGAATTTCATGCTTCTGTGCAATATCTTTGGTGATGACCTGCAAAAAAATGCTCAGCTGCATCAGTGCAAATTCACCaataggatcagacctttaatGAATCCTATAATTCCAGTAAACCTTACCTTATTTCCCTGACCCCACTCCCAGATGCCTGGGGCTTGCATACCAAAAAGGGCGAATGGGTCCCTGCCGATAATAATCAGTCCAATCACCAACAGTTTGAACACAGACAGGAAGGAAGCAACGTCTATAGAGGGGCACAGGAAGATAATTCTCCCCTTCAATACGGATGTCTGGGTACCGCTGGTACAAGGCCTGCGTGTACTCTTCAAACACCCGCTTGTACCCTCAGGAAATACAATTTGAAATTTTAGAAGGGGTCCCGTAGCAAACTGCATTTTCATCTTCTTCACGCCGCTGCTGTCACCAGACGTGGCGCAGCACAGCGAGAATACTCCCAAAACAAGGAGCGAAAAACGCAACAACTTCATCGCCAACCGTTCCGTGGTGTGTTTCCTCACTAGATAGAGAGGCAGGCCGCAGGTTAATCTCaatctgtagctagctagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158522 lncRNA downstream 65753 24787583 ~ 24797256 (-) True G117616
TU158509 lncRNA downstream 133787 24728871 ~ 24729222 (-) True G117605
TU158498 lncRNA downstream 176377 24682857 ~ 24686632 (-) False G117596
TU158493 lncRNA downstream 176377 24684342 ~ 24686632 (-) True G117596
TU158485 lncRNA downstream 187255 24673886 ~ 24675754 (-) True G117589
TU158661 lncRNA upstream 7655 24876086 ~ 24892459 (-) False G117718
TU158662 lncRNA upstream 7655 24876086 ~ 24892459 (-) True G117718
TU158664 lncRNA upstream 7655 24876086 ~ 24892459 (-) False G117718
XR_005640664.1 lncRNA upstream 154970 25023401 ~ 25048014 (-) True LOC120568137
TU158767 lncRNA upstream 412977 25281408 ~ 25335213 (-) True G117786
XM_039816661.1 mRNA downstream 212821 24582892 ~ 24650188 (-) True tnn
XM_039816663.1 mRNA downstream 218420 24582892 ~ 24644589 (-) False tnn
XM_039816662.1 mRNA downstream 218420 24582892 ~ 24644589 (-) False tnn
XM_039816660.1 mRNA downstream 218421 24582892 ~ 24644588 (-) False tnn
XM_039815119.1 mRNA downstream 694366 24164841 ~ 24168643 (-) True agxtb
XM_039815586.1 mRNA upstream 1571 24870002 ~ 24874965 (-) True LOC120568222
XM_039815726.1 mRNA upstream 51999 24920430 ~ 24921389 (-) True arl14
XM_039815725.1 mRNA upstream 56149 24924580 ~ 24933813 (-) True ppm1la
XM_039815413.1 mRNA upstream 75229 24943660 ~ 24949323 (-) True tal1
XM_039815414.1 mRNA upstream 75229 24943660 ~ 24949314 (-) False tal1
TU158445 other downstream 326513 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 841508 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 842571 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 993783 23869155 ~ 23869226 (-) True trnap-agg_8
unassigned_transcript_560 other downstream 994984 23867952 ~ 23868025 (-) True trnai-aau_23
TU158687 other upstream 53772 24922203 ~ 24923318 (-) True G117732
TU159298 other upstream 1793190 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 1951407 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 2802545 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 2845036 27713467 ~ 27714390 (-) False G118524

Expression Profile