RNA id: TU158801



Basic Information


Item Value
RNA id TU158801
length 207
lncRNA type sense_over
GC content 0.54
exon number 2
gene id LOC120568894
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25743327 ~ 25773468 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTACCCATGTGGAGGAACTCTACATTCTGCCCCCTTCAGTGTGGTGAGAACAGCCACTATAACACATGTGCTGATGGCTGTCCAGAAGTGTGCTCCAGTCTGGATATAGTTGGCTTCTGTGGAAGCTGTGAGGAAAGATGCGAGTGCGACTCTGGCTTTCAGCTCAGTGGGGGAAAGTGTGTCCCAGCAGAGGACTGTGGGTGCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640686.1 lncRNA upstream 618506 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 630933 25118231 ~ 25118502 (+) True G117704
TU158596 lncRNA upstream 705490 24987499 ~ 25043945 (+) False fgf12a
TU158548 lncRNA upstream 879348 24863027 ~ 24870087 (+) True selenot1a
TU158539 lncRNA upstream 911206 24837956 ~ 24838229 (+) True G117632
TU158810 lncRNA downstream 26103 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA downstream 32387 25782175 ~ 25793191 (+) True LOC120568901
TU158824 lncRNA downstream 79976 25829764 ~ 25830695 (+) False G117829
XR_005640803.1 lncRNA downstream 122541 25872329 ~ 25873402 (+) True LOC120568900
TU158831 lncRNA downstream 130716 25880504 ~ 25888841 (+) True LOC120568898
XM_039815787.1 mRNA upstream 191803 25376185 ~ 25557632 (+) True LOC120568352
XM_039815789.1 mRNA upstream 191803 25376185 ~ 25557632 (+) False LOC120568352
XM_039815788.1 mRNA upstream 191803 25376185 ~ 25557632 (+) False LOC120568352
XM_039815790.1 mRNA upstream 191803 25376185 ~ 25557632 (+) False LOC120568352
XM_039815908.1 mRNA upstream 395652 25281304 ~ 25353783 (+) True LOC120568394
XM_039816642.1 mRNA downstream 23989 25773777 ~ 25777677 (+) True LOC120568895
XM_039816643.1 mRNA downstream 58233 25808021 ~ 25811280 (+) True LOC120568896
XM_039816728.1 mRNA downstream 181753 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 210018 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 218822 25968610 ~ 25972306 (+) True LOC120568964
TU158583 other upstream 795188 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1073682 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 1073682 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 1694731 24049764 ~ 24054704 (+) False LOC120569114
TU158802 other downstream 5305 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 26103 25775891 ~ 25793954 (+) False LOC120568895
TU158825 other downstream 80267 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 465939 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 645638 26395426 ~ 26402078 (+) True G118011

Expression Profile