RNA id: TU158810


Basic Information

Item Value
RNA id TU158810
length 305
lncRNA type sense_over
GC content 0.47
exon number 3
gene id LOC120568895
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25773777 ~ 25793954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCACAACTTCTTCACCCACTGTCTCTTCAGCACCAAATACAACATCTACACTGATGGAAGGGAGTACAACGTCAGCATCTAGGCCTACTGTCTCTGTTACTACAGCAACCAGCCAAACAAGCAGCAGCTCACCTAcaccagcagataacagcacaactttaccagtctcaccagcagataacagcacaactttaccagtctccccagcagataacagcacaactttaccagtctcaccagcagataacagcacaactTTACcagtctcaccagcagataacagcacaactttaccagtctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158801 lncRNA upstream 26103 25749435 ~ 25749788 (+) False LOC120568894
XR_005640686.1 lncRNA upstream 644962 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 657389 25118231 ~ 25118502 (+) True G117704
TU158596 lncRNA upstream 731946 24987499 ~ 25043945 (+) False fgf12a
TU158548 lncRNA upstream 905804 24863027 ~ 24870087 (+) True selenot1a
TU158824 lncRNA downstream 35810 25829764 ~ 25830695 (+) False G117829
XR_005640803.1 lncRNA downstream 78375 25872329 ~ 25873402 (+) True LOC120568900
TU158831 lncRNA downstream 86550 25880504 ~ 25888841 (+) True LOC120568898
XR_005640801.1 lncRNA downstream 86633 25880587 ~ 25888832 (+) False LOC120568898
TU158841 lncRNA downstream 110959 25904913 ~ 25905131 (+) True G117845
XM_039816641.1 mRNA upstream 2423 25743327 ~ 25773468 (+) True LOC120568894
XM_039815787.1 mRNA upstream 218259 25376185 ~ 25557632 (+) True LOC120568352
XM_039815789.1 mRNA upstream 218259 25376185 ~ 25557632 (+) False LOC120568352
XM_039815788.1 mRNA upstream 218259 25376185 ~ 25557632 (+) False LOC120568352
XM_039815790.1 mRNA upstream 218259 25376185 ~ 25557632 (+) False LOC120568352
XM_039816643.1 mRNA downstream 14067 25808021 ~ 25811280 (+) True LOC120568896
XM_039816728.1 mRNA downstream 137587 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 165852 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 174656 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 174656 25968610 ~ 25972306 (+) False LOC120568964
TU158802 other upstream 20001 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 821644 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1100138 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 1100138 24673924 ~ 24675753 (+) False LOC120569045
XR_005640839.1 other upstream 1721187 24049764 ~ 24054704 (+) False LOC120569114
TU158825 other downstream 36101 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 421773 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 601472 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 605466 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 622554 26416508 ~ 26418008 (+) True ccl20a.3

Expression Profile