RNA id: TU158824



Basic Information


Item Value
RNA id TU158824
length 240
lncRNA type inter_gene
GC content 0.49
exon number 4
gene id G117829
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25829764 ~ 25830695 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTTGGAGAAATAGAGTCTGTAGATAATgttgtgctgttatctggtggggagactggtatGGTTGTGCTGTTATCTGGTGGGGAGACTGGTATGGTTGTGCTGTTATCTGGTGGGGAGACTGGTATGgttgtgctgttatctgctggGGAGACTGGTATGgttgtgctGTTATCTGGTGGGGAGACTGGTATGGTTGTGCCGTTATCTGGTGGggagactggtaaagttgtgcCGTTATCT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU158810 lncRNA upstream 35810 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA upstream 36573 25782175 ~ 25793191 (+) True LOC120568901
TU158801 lncRNA upstream 79976 25749435 ~ 25749788 (+) False LOC120568894
XR_005640686.1 lncRNA upstream 698835 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 711262 25118231 ~ 25118502 (+) True G117704
XR_005640803.1 lncRNA downstream 41634 25872329 ~ 25873402 (+) True LOC120568900
TU158831 lncRNA downstream 49809 25880504 ~ 25888841 (+) True LOC120568898
XR_005640801.1 lncRNA downstream 49892 25880587 ~ 25888832 (+) False LOC120568898
TU158841 lncRNA downstream 74218 25904913 ~ 25905131 (+) True G117845
TU158842 lncRNA downstream 75420 25906115 ~ 25906316 (+) True G117846
XM_039816643.1 mRNA upstream 18484 25808021 ~ 25811280 (+) True LOC120568896
XM_039816642.1 mRNA upstream 52087 25773777 ~ 25777677 (+) True LOC120568895
XM_039816641.1 mRNA upstream 56296 25743327 ~ 25773468 (+) True LOC120568894
XM_039815789.1 mRNA upstream 272132 25376185 ~ 25557632 (+) False LOC120568352
XM_039816728.1 mRNA downstream 100846 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 129111 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 137915 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 137915 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA downstream 138210 25968905 ~ 25972306 (+) False LOC120568964
TU158814 other upstream 35810 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 73874 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 875517 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1154011 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 1154011 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 385032 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 564731 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 568725 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 585813 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 760135 26590830 ~ 26600072 (+) True prkab2

Expression Profile


TU158824 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
End of interactive chart.

TU158824 Expression in each Bioproject

Bar chart with 4 bars.
TU158824 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.