RNA id: XM_039814613.1


Basic Information

Item Value
RNA id XM_039814613.1
length 2311
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC120567655
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26048789 ~ 26051099 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATCCGATGAGAACATCTGATGGCTCTGGCCGAGGTTTGGTTTCGGGTGACGGCTCCTTTAAGAAAACGGAACTGAGCCTCGGCTTTTGACGCGCTGCTGAGGATGTGGGCAGGAAACGCCATGCAAGAGCGGAGGAGCGATCACGCTTCCCAGCCCCGTTGCACAATACAGTGCGATCAAAATGTGCTTTAATTCGCCACGCTAATGTCCAGGAGCGGCCATTCTCCTCGGATCTGCGCTCCGCGGCCGTCACAGAGCAGGCGAGGAGGATTTGACTCCTATCCGAGCGAGAGGGCAGCCTATCCAGCCTGCTCGCTTTGAAAACATCGGGGCTGGTCAGCGggtgggagagagacagagagagagagacagagagagagagagagcgcaggCAGGCTTCGtcgcggaaaaaaaaaaaaggaggtgtCTGCCATGAGGGAGTACAAAGTGGTTGTTTTGGGCTCGGGTGGAGTCGGGAAATCGGCGCTGACGGTCCAGTTCGTGACGGGCTCCTTCATCGAGAAGTACGACCCCACGATAGAGGATTTCTACCGGAAGGAGATCGAGGTGGACTCGTCCCCGTCGGTGCTGGAGATCCTGGACACGGCGGGGACCGAGCAGTTCGCCTCCATGCGAGACCTGTACATCAAGAACGGCCAGGGCTTTATTTTGGTTTACAGCCTGGTGAACCAGCAGAGCTTCCAGGACATCAAGCCGATGAGAGACCAGATCATCCGGGTGAAGAGATACGAGAGGGTGCCCATGATCCTGGTGGGAAACAAGGTGGACctggagggggagagagaggtgtcTTCCGGGGAAGGCAAGGCGCTGGCCCAGGAGTGGAACTGCCCGTTTATGGAAACTTCAGCCAAAAATAAAGGATCAGTCGACGAACTGTTTGCGGAAATAGTCAGACAGATGAACTATTCAACTGTTCCCAGTGGTGGCGACCAGTGCTGCTCATGTGTCCTGctctaaaaaacaacaacaactaaccTACAGAAAACAGTGCATCCGGGCTGAATTGGAGCTTCTAAGTTGTCCTGCAGGCTTTTTGCGAAGCTATTCTCTCTCCTCACactgttgtcttattgttgcacACAAATCAACGACGACAATAATCCATTGTGTATTATAGCCTGGAAAAGTGTTTACATGACAAAGTACTTGAatgttttgggatttttttttttttttaatatagctTTGTATATGACACTTCTCTGGAAATGTGCCTCAGTGGGAATGTCTTATTGTGAAACCTAAGAGACACCTGTTTTctggttattgttttttttttgtggttttatttGTTGAGTTGTACTGTTACATCTTCTAGGCCGGGTCCATCTGTTTTAGGGTTGGTGGGGTTATGCTAAATCCAGGCAGAGCTGGGATTGGTCACTTGTAAGGTCTTTTTTTGGGTGAGACCACGGGGCCTGAAAGCGCTTAAATCCGCTCCTAAACGTATCAGTCACCACTCTAGCCTTGCACAGGTTACTCACACCAGATCTCCACAATTTATTTCCCCAAAAGGTCAAGTGTGATCCAAGAGGCGCAGACCCCCCCACCCACTaagatactgtatttgaagCCGTGGACTGTGGTGGAGTTGTGTTACgactaaatgtttttgtttttatccccccccccctctccggTCTGGTGAAAGTGGATTTATCATGGAACTTGCACTTAGCTGACGGTGTCCCTCCTCAGTGTGCACAAACAAGGACCTTAGTGCATTGCTGTCGCTGCATGGGGAACGCCACAACCCCATGTCAAGTGCCTTCCTAAGAAAACTCCTGTGACTGTGCCAACTGATGAGCCCTACTTCCTCTGCAGTGCGTCTTGATGGCAATCAGAACTTTTTTTAGCAGTTTTCAGTAAACAATCTAGTTTAATTTGGTGTTGAAGTGAGGAGAGCCTCTAACCTATCTTGCTGTCAGGAAGCCGAGCTTGTATCAGACCTGTTTTTTCAGGGTCCGACTCAAGCCGTTTCTCGAGGTACTAGTCCAACAAGAACAACAGTAACTTTAGCCTACTAGGATTGTGGTTCAGTGAATGGCAagccatgtgtgtctgtattatctagattttttttttcttttctaaaaaaaaaaaaaaaaaaaaaagaaaattttgaCTTACCGTAATTGTAATTCTctctttggacaaactcttctGCCATCCACCTGTCAGTTTGAAAGACTTAATACTTAATACAAAACGCATTTTACGTAACGCTGTGTGCTGTGCTTGTCTCTGCTGATAACATAAAGTGTCTACATTTTTGGGGTACTTTGA

Function

GO: NA

KEGG:

id description
K07838 RAP2B; Ras-related protein Rap-2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158843 lncRNA upstream 132067 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 142473 25906115 ~ 25906316 (+) True G117846
TU158841 lncRNA upstream 143658 25904913 ~ 25905131 (+) True G117845
TU158831 lncRNA upstream 159948 25880504 ~ 25888841 (+) True LOC120568898
TU158959 lncRNA downstream 7155 26058254 ~ 26065839 (+) True G117917
TU158981 lncRNA downstream 153512 26204611 ~ 26204830 (+) True G117933
TU158986 lncRNA downstream 157257 26208356 ~ 26208871 (+) True G117938
TU158990 lncRNA downstream 255590 26306689 ~ 26307634 (+) False ece2a
TU159066 lncRNA downstream 263166 26314265 ~ 26314630 (+) True G118009
XM_039814591.1 mRNA upstream 2620 26000222 ~ 26046169 (+) False LOC120567653
XM_039814589.1 mRNA upstream 2620 26000731 ~ 26046169 (+) False LOC120567653
XM_039814592.1 mRNA upstream 2620 26004910 ~ 26046169 (+) False LOC120567653
XM_039814588.1 mRNA upstream 2620 26005178 ~ 26046169 (+) False LOC120567653
XM_039814587.1 mRNA upstream 2620 26006138 ~ 26046169 (+) True LOC120567653
XM_039814690.1 mRNA downstream 22272 26073371 ~ 26115398 (+) False kcnab1b
XM_039814695.1 mRNA downstream 22455 26073554 ~ 26115398 (+) False kcnab1b
XM_039814696.1 mRNA downstream 25242 26076341 ~ 26115398 (+) False kcnab1b
XM_039814693.1 mRNA downstream 25444 26076543 ~ 26115398 (+) False kcnab1b
XM_039814691.1 mRNA downstream 27537 26078636 ~ 26115398 (+) True kcnab1b
TU158825 other upstream 218094 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 254835 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 292899 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 1094542 24950568 ~ 24954247 (+) True G117664
TU158471 other upstream 1373036 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 164628 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 344327 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 348321 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 365409 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 539731 26590830 ~ 26600072 (+) True prkab2

Expression Profile