RNA id: TU158986


Basic Information

Item Value
RNA id TU158986
length 516
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G117938
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26208356 ~ 26208871 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GggccagacttgattagaacgaaggaaatgcaaactctgtaaacttgaatagaatcggcactaccatgataaacaaCCTTTGTCTGGGAActggagtaaacctgaaatcagaggtgtgtcttTAAGCTGGGACAGTTTCCATTCAAGGAAACACCCACGATTCCAAAGGAATATAATTCCGAACCTGGGAATGATTCAGgactgattgatgtaattcctgaagaggaggcatgtcatttcagtccactgctggcagtgtttcatgttttatgtttgattgtttttgtcatgtcgttttcatcgtgttgttcattaaaccttttgcttaatctttcaattggACCccgcctctccttcctcctcagaaatcgaacgaacacgtcttttagGATTTCTTAACAGTAGCCAACATTAAATTACACCGGTTACGccgcaccgtaaagaaaagacctttacgacagcaggtgtggtaaaaacactaccacttttgtccaaagcagccactagaatcaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158981 lncRNA upstream 3526 26204611 ~ 26204830 (+) True G117933
TU158959 lncRNA upstream 142517 26058254 ~ 26065839 (+) True G117917
TU158861 lncRNA upstream 157478 26050135 ~ 26050878 (+) False LOC120567655
TU158843 lncRNA upstream 291634 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 302040 25906115 ~ 25906316 (+) True G117846
TU158990 lncRNA downstream 97818 26306689 ~ 26307634 (+) False ece2a
TU159066 lncRNA downstream 105394 26314265 ~ 26314630 (+) True G118009
TU159119 lncRNA downstream 212583 26421454 ~ 26496802 (+) False wdr47a
TU159118 lncRNA downstream 246160 26455031 ~ 26495841 (+) False wdr47a
TU159180 lncRNA downstream 323295 26532166 ~ 26601368 (+) False G118095
XM_039815718.1 mRNA upstream 13476 26166546 ~ 26194880 (+) True yeats2
XM_039815721.1 mRNA upstream 13476 26166546 ~ 26194880 (+) False yeats2
XM_039815722.1 mRNA upstream 13476 26166546 ~ 26194880 (+) False yeats2
XM_039815720.1 mRNA upstream 13476 26166810 ~ 26194880 (+) False yeats2
XM_039814698.1 mRNA upstream 44844 26139661 ~ 26163512 (+) False klhl24a
XM_039816508.1 mRNA downstream 5561 26214432 ~ 26215830 (+) False LOC120568800
XM_039816507.1 mRNA downstream 5778 26214649 ~ 26215830 (+) False LOC120568800
XM_039816876.1 mRNA downstream 9127 26217998 ~ 26309547 (+) True ece2a
XM_039816116.1 mRNA downstream 121353 26330224 ~ 26334321 (+) True alg3
XM_039814581.1 mRNA downstream 152264 26361135 ~ 26368256 (+) True prss56
TU158825 other upstream 377661 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 414402 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 452466 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 1254109 24950568 ~ 24954247 (+) True G117664
TU158471 other upstream 1532603 24673924 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 6856 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 186555 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 190549 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 207637 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 381959 26590830 ~ 26600072 (+) True prkab2

Expression Profile