RNA id: TU159050


Basic Information

Item Value
RNA id TU159050
length 1856
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G117993
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26193007 ~ 26194884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAGTtgagtttttctttgtttattatAAGAATATTGATTATATTTTTGGTTTGCACTGAAACATGAAAATACAATGTTTGGGTAACCTTCTACACTAATTTGGTTCAACAGGCATCACAACCACTCAGTCCAAACACTTCCTCTCATCCAATCATCCACACATTAACATAATGCAAAGCTCCACATTAAACAGAATTACCAACACTACATCAgcctacaaaacacacacacacacacacacacacacacacacacacacacccacacacacacacacacactcaaattcATTAACGTTTATGATGACTACATCCACTATCCACACAtattcatacacacactcactactGTTAGGGCATTGCTGTTCGCAGTTATTGTTattagataaaaaaataaaacaggatttGAAAACACCATCCATTTCATATTGGTCACATACACTGTGTACATCACATGACTGATACATTATGGTTGTTAACCAGAACACCTAAAAGCACTTTAAACTGGCTATCAAACCTGTCTCATGAAGGAGAGAAGATGCATACTGAGAGTGAGGTCTTCAATTTCGAATGACGGCATGATTTGTTCATTAAACTATATAAGCTCTGTCTCGTTAAGAGTCCGACAAGGGATTTTTCACAACCCCCTTCAGAAGACGCAAGTGATTCATGTTTCTTATTATTAGGTTGCAGACAGATTATAAAGAGAGCCTTACAAAACAGCGGTATTGTAAGAGCCATAATTACCTCGGCCAGGTAACACTGAAATACATCAAAGCGTATTCGCAGTGACAAAGCATTGGTTGCCATGGCATCGACACTTTTGGAAGAATCTCTCCGGTTGCTTTGTCCAAAGTACCCGCCAGACATTACTATTAACGTGATGGATAGAGAACTCTAATACTCAGGTGTTCCTTAGCGTTTCCAACTTGCTGTTCGCCTCTGCTGGTGAACTGAACATGTGCCATCAGGGGGAAGAATGAAGGAGGGGACAACTGTctgattattataataattattattatttttttagccCTGTATGTCACTCAGGCTTCATTTCCCTGATGTCTAGCAGGAAACACTTCATCATTAAAATAATCTTGTTATGAGGTAAACGGGAGCACAACGGCCTCTCAAAATCAAACAACACGAGTCCCACAATGCTTCTTCTCGATACATTAGGACTAAAACGTTACGATATACCCAGAGTAAGAGAAACATTTGTTATTCCGCTGCTGTGCGGCTGCTGTGAGAAGCAAGCCGAGCCCTTCTATTATAAAGTTAATCAATACAGTACATTAGTTATTACTGTGCAACCTGAGGCAACAGGACTACATCCAGTGGTGAATATTCACACAGTCAGCTCACAGACTCACAACAGTCCTCACATCTCAGTATGTGTCGATTACCAGTCAAAGTCATACTTGTTATGCCTCAATTGTCCTTAGACAGGTAAcccatgtgtgtgttggtgaggaAGTCACAGGTGGGGATGCTACTGACCGCCTGGTGGATGTTCATGGCTGTGATCTCTCTCGGAGTCCTGCAAAACCCAATGTTACAAGGTTAGGATTTTTGGAGCATGGCTCCACTCAGGAAATATGTTTCAGTCTGCCCGGGACATCACTGGTTGGCATTGAATATTCAGGACTGTTTGTCATTAACTGCTTTGTTGAATATTCAGCTCTGAATCAATGCATTCTGGGGTCTCTTATATCAGTTCAGTGCCCCGCTGTCTTACATCATGCAAATGGCACAAAGCGCACACCATTTTTACTGAAGCATagaatgacaaaaacatcacacaaaacaaaaatatgcaaAGATTTCTTAAGAGCACAAAACACACTCTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159011 lncRNA downstream 90918 26097593 ~ 26102089 (-) True G117957
XR_005640606.1 lncRNA downstream 106663 26064589 ~ 26086344 (-) True LOC120567720
XR_005640605.1 lncRNA downstream 127113 26064589 ~ 26065894 (-) False LOC120567720
TU158939 lncRNA downstream 141929 26048930 ~ 26051078 (-) True G117899
XR_005640814.1 lncRNA downstream 200798 25989457 ~ 25992209 (-) True LOC120568967
TU159051 lncRNA upstream 15465 26210349 ~ 26210668 (-) True G117994
TU159052 lncRNA upstream 16624 26211508 ~ 26211748 (-) True G117995
TU159059 lncRNA upstream 113903 26308787 ~ 26309326 (-) True G118002
TU159094 lncRNA upstream 120938 26315822 ~ 26319563 (-) False camk2n1a
TU159131 lncRNA upstream 226566 26421450 ~ 26425869 (-) False LOC120569074
XM_039814882.1 mRNA downstream 134435 26052099 ~ 26058572 (-) False LOC120567824
XM_039814881.1 mRNA downstream 134435 26057308 ~ 26058572 (-) True LOC120567824
XM_039816737.1 mRNA downstream 204060 25972731 ~ 25988947 (-) True LOC120568966
XM_039816736.1 mRNA downstream 224587 25963373 ~ 25968420 (-) False LOC120568965
XM_039815723.1 mRNA upstream 959 26195843 ~ 26203560 (-) True map6d1
XM_039816630.1 mRNA upstream 120886 26315770 ~ 26319595 (-) True camk2n1a
XM_039816117.1 mRNA upstream 130604 26325488 ~ 26330262 (-) True mul1a
XM_039816115.1 mRNA upstream 139556 26334440 ~ 26348151 (-) False vwa5b2
XM_039816114.1 mRNA upstream 139556 26334440 ~ 26348151 (-) True vwa5b2
TU158687 other downstream 1269689 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1656511 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2171506 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2172569 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2323781 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 466737 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 624954 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1476092 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1518583 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1522667 27717551 ~ 27718759 (-) True G118524

Expression Profile