RNA id: TU159094


Basic Information

Item Value
RNA id TU159094
length 3058
lncRNA type sense_over
GC content 0.42
exon number 2
gene id camk2n1a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26315770 ~ 26319595 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCACTTCCCTCACCAGACATCAGCCAGCAACACAGGCGAACACAACACTCTCTGCCTCGGTCTCGCTCACACGCTGTCTCTCCCTGCAGCTGCAACACATCCAGAGAGCACAGAGAGACCACAACAACACCCGGACCTGAGACGCTGGTGGCCCCTTGTCCACATCGAGTAACACCCAGAAAGGATCCCAGCAGGAGCTGCACACCAACCGCTGcagcttgcacacacacacaaaaaagggaTCTACGGCTTTATTGCACATATAAAGCCACTGAGGAAGACTTGTATCTACTTTTTAAATCTACGCTGGTGATCCTTCTCCGTCGTGCCACCATGTCCGAGGTGCTGCCATACAACGAGGGGAAAATGAGCGGCTACGGGGCGGACAGCGAGGTCAGCCAGATGTCCTTTAGCTGCGGACTGCAGGACTCAAGCGCCTTTTTCGCTGCGTCGCAGGCCAAAAGACCCCCAAAGCTGGGACAGATCGGCCGAGCCAAGCGAGTGGTCATCGAGGATGACCGAATCGACGAGGTCCTGAAGGGGATGACAGACAAGTCTTCACCCGGCGTTTAAACGTGAGAGACGCCTTGCGGACTTTTTCATTTTGATGACCGATTTGAAGCACTTGTCGGCTGTGCATGTTCGAGGATTGCAGGAGAGAAACGACGGCACGAAGCGAAGCTGGGGTGACTGACGAAAAGGCAAcgaaaaaaaaaggcaacgAAGGGGGGAAATGGAGAAGGCTAAAGGAAGAGAAATGTGGAAGAAAGTGATGAAGAAAGaagtggaaagagagagagagagagagagagagactctggaAAAGACCACGATTTATCATGGGATTGCTGGCAATTCTCCAAACGAATCCCGATTGTAACTACTGTTGCGCAGCAAGATGTTGAGATGGCGGACACCGCTCTGTATCTCAACCTCTGCTGACTTTAATGATGGATGAACTTGTCATTACTTCACGACCATCTCTTGTTCCTTTCCAACAGCGCTGTAAGCAACACAATACTGCAACTGGAGGCTGAAGCTAAATCCCAGCCCTATTTCAATAAGTTGTACAGTAGGTAGGCTAAGCTCTCagacgcccccccccccccatcctttAGGCTTCGCTTTGTTGATTCAGTCAGCGACGGTGCATTCAAGGGAGCTGTCCTTTCAGCACTGGTCCAATGCATTCCTGTTGCTGCTAACGCTTTTTCAAAAAACAGACCAACCAAACTCTTGAGTCTGCTGAATAGAGGAGACCCATTGTATGTAAAACATATATATCTACGAGGATGGTGCAATGTTAATATGTTCTGTAGTAGAAGCCCTGTTTCTTTTTGGCCCTTAAAGAGCATTATAGGCCACAGATTAAACCTGAACCACAGGcgacattcttcttcttcttcttcttcctgcaTTACCCATCAGTGGGGTTAAAGGTGCAGCTTGGCACCTTCATGTAGCTGATTTACACCTgcacatgtctttttttttccccctctctatttcttcaatcttttttttttttttgcattttcaaaTGCTCAGATATCTACAGAGGCCAGCACAGTTGTGGAGATTATagtaaatgtttaaaataataGTCATGAAAttgatgggaaaaaaaattgtatttccaTTATTTGGTTATTTCAATTTTGCAATTATTCGTGTTTCGTCCTCTATACGTTTTTTCTCCATCTCTTTGCATGAACTTTCACTGCGGTGCCAACGCAGGTGCCACTTCTCTTACCTTGGCACGCTTCTTTTTAACAAAagtcatatttgtatttttatatctAAATCTTTGTTATTTAAATGATATGCTAGTCTATCGTCTTACAATtcatcaacaaaaatatttcTACTTCAGAGAGGATATACAGAATGAGAAGAGGCTTCATGGAGGCGAAGCTACGTAAGATTTTGGTGGACTGGTTTCATTCTATATCAGAGGTCGGGCGTTTTTTAAAGACTAACTGAATGTGTCTGGGGTTTTTGCACACATCAATGTTAAACTATTATTAAGAAATCGTATACTGTGACTTGAGCTTCGTTGATGAATTTGTTAGAAAATGGCAGTTTTAGAGTATATTGCACTGTTTACGAGTATCCTCAAATAACACGTTGTTATTTGACCGattttggacattacagtttttgttttttaattttgtttattttgtaccATTATTTTAAAGAAACTGGATATGGTTTGTTGTGCATGAAACCTTAATATTTTCAACAATGAAACATCGTTTTATGAagcaaaaaagcagcaaaaatgtcATGACATTCTAAGAATGAGTCATTGTATATTATGATGCCATTTTCACTGTATTTGGTGAATTAATAAATGGTGAAAGAACATGTTAATGTGATTCTTTGGTATGGCTTTTGTTGCAAGATATTTTGTTTTAGTAACAATTCAATAGAAGATGACAAACAATTGGAACATTAAAGTTTGTTCTCTGAATAAAAGTcaaggagaaaaaacaacatagAGCACATCACCTCAGCACAGTGACTGTGATTAGCataccattttgtttttttagacaaaacaacagaacatactgtacatgtagcaTAGGGAAGCAACAgtcttaaatatatatatttgcagcTTTTGGACTCCGTAGCCATGACCTCAGGGACAGTAAATACTGATCCTTAATTAAAGAGCGGGTAAGGAACAGTCATCCATCTGTTAAGCTGTTAAACAGCTCCATGCAGGCCTATACTAGTCAATGTACTGTGTTAAACCACAGCCCCCTGGGGAGCCATGACTGGCCACATCATCATCTATCAAAGTCTACATGTGCAGTGTTCTCATACAGTAGCTCTCACACACAGCCTATAGCAGGCCTGTACACTCTCGCCATAAAAACCTATATCGTGCACAAAAATCAACTGTTCTGTGGTGAAGTTTTGAACCATTTATCTATGACTTTTTGTTGGCTTTTTGCTTGTTAGTTTCCACATACTCTCAATCACACAATGGTATGAAGGTGTTAAGCGATTCAGGTCGATGGAAAACTTCAGTCAAACTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159059 lncRNA downstream 6496 26308787 ~ 26309326 (-) True G118002
TU159052 lncRNA downstream 104074 26211508 ~ 26211748 (-) True G117995
TU159051 lncRNA downstream 105154 26210349 ~ 26210668 (-) True G117994
TU159050 lncRNA downstream 120938 26193007 ~ 26194884 (-) True G117993
TU159011 lncRNA downstream 213733 26097593 ~ 26102089 (-) True G117957
TU159131 lncRNA upstream 101887 26421450 ~ 26425869 (-) False LOC120569074
TU159132 lncRNA upstream 101887 26421450 ~ 26424927 (-) True LOC120569074
XR_005640834.1 lncRNA upstream 101892 26421455 ~ 26426798 (-) False LOC120569074
TU159151 lncRNA upstream 154324 26473887 ~ 26474956 (-) True G118075
TU159153 lncRNA upstream 157900 26477463 ~ 26479678 (-) True G118076
XM_039815723.1 mRNA downstream 112262 26195843 ~ 26203560 (-) True map6d1
XM_039814882.1 mRNA downstream 257250 26052099 ~ 26058572 (-) False LOC120567824
XM_039814881.1 mRNA downstream 257250 26057308 ~ 26058572 (-) True LOC120567824
XM_039816737.1 mRNA downstream 326875 25972731 ~ 25988947 (-) True LOC120568966
XM_039816735.1 mRNA downstream 347402 25963373 ~ 25968420 (-) True LOC120568965
XM_039816117.1 mRNA upstream 5925 26325488 ~ 26330262 (-) True mul1a
XM_039816115.1 mRNA upstream 14877 26334440 ~ 26348151 (-) False vwa5b2
XM_039816114.1 mRNA upstream 14877 26334440 ~ 26348151 (-) True vwa5b2
XM_039815716.1 mRNA upstream 73326 26392889 ~ 26400884 (-) False eif4e2
XM_039815717.1 mRNA upstream 73326 26392889 ~ 26400884 (-) True eif4e2
TU158687 other downstream 1392504 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1779326 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2294321 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2295384 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2446596 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 342058 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 500275 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1351413 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1393904 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1397988 27717551 ~ 27718759 (-) True G118524

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00032919 True 2125 mRNA 0.41 2 NC_007113.7 44943396 ~ 44946094 (-)
grasscarp (Ctenopharyngodon idella) TU409926 False 2836 lncRNA 0.42 2 CI01000152 1890149 ~ 1893459 (-)
rainbow trout (Oncorhynchus mykiss) TU409926 False 4824 lncRNA 0.36 3 NC_048569.1 5334043 ~ 5339341 (+)
rainbow trout (Oncorhynchus mykiss) TU853749 True 2226 lncRNA 0.40 2 NC_048572.1 80071647 ~ 80074536 (+)
eurasian perch (Perca fluviatilis) TU21261 False 392 lncRNA 0.49 2 NC_053113.1 9885454 ~ 9944445 (+)
bowfin (Amia calva) AMCG00009563 False 2089 mRNA 0.40 2 CM030126.1 41596308 ~ 41599124 (+)
bowfin (Amia calva) TU21261 True 301 lncRNA 0.49 1 CM030122.1 38339575 ~ 38339875 (-)
tiger barb (Puntius tetrazona) TU21261 False 2117 TUCP 0.40 3 NC_056700.1 21619287 ~ 21659831 (-)