RNA id: TU159113


Basic Information

Item Value
RNA id TU159113
length 643
RNA type TUCP
GC content 0.43
exon number 4
gene id ccl20a.3
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26416508 ~ 26418008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCCTGTTCTTACGAGGAATATAAGAGGAGGCTGTGATCACCAGCAGGGTCACAGCCTCTCTGACTCCACCTAAAACAACAGCTCAGCTCAGACGAAGACATGGTGTCAATCAAAGCCACAGTGCTGGGGATCACGCTCCTTGCCGTTTGTCTACTGGCCACAAATGCATCTGCAGtgCGCCATGGATGCTGTCGAAATTACATGGCAATCAAAATACCATTTGCTAACATCAAGGGTTACTCGGTCCagactgtcacagagctgtgtcCTATCAATGCCATCATTTTCCACACAAAGAGGGGTCAAGCATGCACCAATCCTGCTTTACACTGGGTGATGGACTATATCAACCGCTTAAGGAGTAAAGCACAATTGGTTCACATCAAGACCGCACAAGCGCAGGAATAAAGCTATTCTGCTTTTTGAAGAGGGCCCGACCAGTTTTTCTGCCTGTTATCCAGTAACCAGTGAACGCATCAGCGAACTCCCGTTTGAAGCtaatttaagaagaaaaaaagtaacaGGCATCAGCTCAGTTTTAAGAGCCTTGTGTAATACACGTTTTATATTCTTTGcttttataaaatgttgtatTTGTACATGTTGTAATATAGAATCATTaaagttttgtttaaaaaaaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159066 lncRNA upstream 101878 26314265 ~ 26314630 (+) True G118009
TU158990 lncRNA upstream 108874 26306689 ~ 26307634 (+) False ece2a
TU158986 lncRNA upstream 207637 26208356 ~ 26208871 (+) True G117938
TU158981 lncRNA upstream 211678 26204611 ~ 26204830 (+) True G117933
TU158959 lncRNA upstream 350669 26058254 ~ 26065839 (+) True G117917
TU159119 lncRNA downstream 3446 26421454 ~ 26496802 (+) False wdr47a
TU159118 lncRNA downstream 37023 26455031 ~ 26495841 (+) False wdr47a
TU159180 lncRNA downstream 114158 26532166 ~ 26601368 (+) False G118095
TU159181 lncRNA downstream 114158 26532166 ~ 26601409 (+) True G118095
TU159184 lncRNA downstream 130648 26548656 ~ 26605084 (+) True G118098
XM_039815715.1 mRNA upstream 22723 26387680 ~ 26393785 (+) False LOC120568303
XM_039815714.1 mRNA upstream 22723 26387989 ~ 26393785 (+) True LOC120568303
XM_039815711.1 mRNA upstream 28986 26369787 ~ 26387522 (+) True chrng
XM_039814582.1 mRNA upstream 48252 26361135 ~ 26368256 (+) False prss56
XM_039816755.1 mRNA downstream 17742 26435750 ~ 26439450 (+) True ticam1
XM_039816842.1 mRNA downstream 22727 26440735 ~ 26479429 (+) True camsap2b
XM_039816844.1 mRNA downstream 22728 26440736 ~ 26479429 (+) False camsap2b
XM_039816843.1 mRNA downstream 22728 26440736 ~ 26477756 (+) False camsap2b
XM_039816845.1 mRNA downstream 23322 26441330 ~ 26477756 (+) False camsap2b
TU159070 other upstream 14430 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 14430 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 199467 26215727 ~ 26217041 (+) True LOC120568800
TU158825 other upstream 585813 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 622554 25775891 ~ 25793954 (+) False LOC120568895
TU159178 other downstream 172822 26590830 ~ 26600072 (+) True prkab2
TU159241 other downstream 347484 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 465551 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 1184016 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1738965 28156973 ~ 28159589 (+) False LOC120568082

Expression Profile