RNA id: TU159118


Basic Information

Item Value
RNA id TU159118
length 506
lncRNA type read_through
GC content 0.45
exon number 2
gene id wdr47a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26421454 ~ 26496809 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTTTACCAGTCCAAGACGGAGAGATACACATGCAGCAGGATtaattcacaaacacacacacacacacacaccacacacacccacaaccaGTTATAATCTAAAAGACACACATTCCCCCTAAAACAACACTCCTTCTGCACCACCAACGCTGTCACGCTCCCTTTTCAACACACTTAACACACATTACCACATTGACTGTTGAATGAGCCTGTCACTCATCTGTAGGAAACCAAAATGGATACAACCCTGTGACACATCAGAAGCACACGTTGCAtgttctccttttttctttacattgCTCACATTGCATCCGTCACACCGACTGTCGTGATCTTGAAAAGGTTCAACGGCAGGATCATTCATTATTCTCCCCATCACTCTATCTTCACTCCTTACACACCGGTCAGTTGCTGCATGTCCTTTTCCCTGAGGAGCTGTTGAGGTTAGACAGGACAGAGTGCTTTGTTCATGATGGTGCCTTCCTTGAGTTTTCAGTTTCCAtagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159066 lncRNA upstream 140401 26314265 ~ 26314630 (+) True G118009
TU158990 lncRNA upstream 147397 26306689 ~ 26307634 (+) False ece2a
TU158986 lncRNA upstream 246160 26208356 ~ 26208871 (+) True G117938
TU158981 lncRNA upstream 250201 26204611 ~ 26204830 (+) True G117933
TU158959 lncRNA upstream 389192 26058254 ~ 26065839 (+) True G117917
TU159180 lncRNA downstream 36325 26532166 ~ 26601368 (+) False G118095
TU159181 lncRNA downstream 36325 26532166 ~ 26601409 (+) True G118095
TU159184 lncRNA downstream 52815 26548656 ~ 26605084 (+) True G118098
TU159201 lncRNA downstream 106815 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA downstream 166441 26662282 ~ 26664844 (+) True G118135
XM_039816755.1 mRNA upstream 15581 26435750 ~ 26439450 (+) True ticam1
XM_039816365.1 mRNA upstream 37040 26416544 ~ 26417991 (+) False ccl20a.3
XM_039815715.1 mRNA upstream 61246 26387680 ~ 26393785 (+) False LOC120568303
XM_039815714.1 mRNA upstream 61246 26387989 ~ 26393785 (+) True LOC120568303
XM_039815711.1 mRNA upstream 67509 26369787 ~ 26387522 (+) True chrng
XM_039816847.1 mRNA downstream 13087 26508928 ~ 26521103 (+) True LOC120569037
XM_039816848.1 mRNA downstream 13087 26508928 ~ 26521103 (+) False LOC120569037
XM_039816849.1 mRNA downstream 13087 26508928 ~ 26519297 (+) False LOC120569037
XM_039814642.1 mRNA downstream 29104 26524945 ~ 26535699 (+) True fndc7a
XM_039814643.1 mRNA downstream 38655 26534496 ~ 26553081 (+) True LOC120567673
TU159113 other upstream 37023 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 52953 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 52953 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 237990 26215727 ~ 26217041 (+) True LOC120568800
TU158825 other upstream 624336 25830055 ~ 25830695 (+) True G117829
TU159178 other downstream 94989 26590830 ~ 26600072 (+) True prkab2
TU159241 other downstream 269651 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 387718 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 1106183 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1661132 28156973 ~ 28159589 (+) False LOC120568082

Expression Profile