RNA id: TU159131


Basic Information

Item Value
RNA id TU159131
length 1741
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120569074
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26421450 ~ 26426798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGATTGCCTTTTAACTGTTTTGTGTTTACATCTGATTTTGTCTTCTATCTGTAGGTGTCCCGTTAGTGCCTCCTGATGCTTGTGACTCTGTGAAGATGAAGATCGTTTTTCTATGAGATGCTGTTATGGCCAGTTTTGAAGTGAAGATGAAAGACTTTCAAGTTCCTCTGATTAATGAGGTGGTGGTAAGGCAATAAAGCAGAACCTCtgaaaaaatgaatggaaaaaaaacaaccgaaCCATGTTTGCCCTGTGGATAGTGGACTCATTCTGCCACTGTCCTGTGTCATTATGTCCCTTTGCTGTGTGACCTGTCCTCTGGGGTTTGAGTGAGTGTCCCTGTCCCCTGCTCTGTCTGTCCTCCTTCCTCTACGCCCTGCCTCGTCTTGTCAGCTCAGCTCACGGTCACAGCCCTGCTTGCCTCGGTGAACATTCAACGCTGTCGGTGAGTTTTGGTATGGATCACATAAAAACCATCGACCGTTGACTGTGCCCCGAGGCTTGCTCCGACGACGTCGGGAatgagcaaaaaataaataaaatgaaatgagcaAAAGGGCAAGTGGGCGCATGCAAAAATCGAGAGACGAAGACGCACACGTACAAAAGTGACACTCTGTTTCCACTGTACCCAAAGACCAAAGGTCACAATCAACATTCATTGCTGTCGCTGGGTTGGACTGTGTAGAAAAGCTCACTGAACAATGAGTGCAACTGTGGCCCAGATCTGCCTGACTCGCGTCTCAGCCAATCGGCCGACCGGATGCGAAAcactttgttttctttatttatattaCTTCTTGTTTTTCACTTCTATTTtctcccctcttcctccctccctggcGCTGAATAGTCTtcaggggaagagagagagagatagagacataAATAGACTTCTGGCGGCTTGCTtgtcctcatcctcctctcctctaATTGGTGGTTATGTGTGCAGCAAGGGGGAAGGAAGCGGAGTGAATGTGTAATCATTTGGAGTCTCTTCTCCTTTAGATGtttcatccctctctcttttttgtttgtctaaTTATATACTGAGCTCTGTTAACTCTGTGTTAACTGTGCTGGCAAGAATGAGCGAGTGACAAAGAGAGGGAGGACAATGGGGAAACACAAAAAGGTGGAGAGATTAGAGCACCAGTAAACGTATTATCTAGTTTTCAGTATATGTATTCTAATATTATTCCTAATGTTGCTGCAAATGTGACCGGATataagcatttatttttttaaatgcagaaagGAGATTGTTTTCACCTCTTTGGCTGAggtctcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattttcctTCTATCCCCAAGCAGCTTGCTCCCTCATGGGAAAACACAAGTCTCTAACCTTGTCTTCCTGCAGACAGTGTGGGACCGGCCACGCTGCTGCCATTTCTCTTTGTACCCATCTGTAACAACTCTCTGACACTGCGTCCTGTATCTGTAATTCATGGAATGTAAACACACAGTTGAGATATATGTAGGAATGCGTTTGGGAAAGTGTGATAATTcatgaattaattaaataaagttgaatcagAATCCATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159094 lncRNA downstream 101887 26315822 ~ 26319563 (-) False camk2n1a
TU159059 lncRNA downstream 112124 26308787 ~ 26309326 (-) True G118002
TU159052 lncRNA downstream 209702 26211508 ~ 26211748 (-) True G117995
TU159051 lncRNA downstream 210782 26210349 ~ 26210668 (-) True G117994
TU159050 lncRNA downstream 226566 26193007 ~ 26194884 (-) True G117993
TU159151 lncRNA upstream 48018 26473887 ~ 26474956 (-) True G118075
TU159153 lncRNA upstream 51594 26477463 ~ 26479678 (-) True G118076
TU159275 lncRNA upstream 106298 26532167 ~ 26601385 (-) True G118165
TU159297 lncRNA upstream 235752 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 306008 26731877 ~ 26732084 (-) True G118186
XM_039816744.1 mRNA downstream 9347 26411167 ~ 26412103 (-) True ccl20a.4
XM_039815713.1 mRNA downstream 11042 26402976 ~ 26410408 (-) False capn10
XM_039815712.1 mRNA downstream 11043 26400982 ~ 26410407 (-) True capn10
XM_039815716.1 mRNA downstream 20566 26392889 ~ 26400884 (-) False eif4e2
XM_039815717.1 mRNA downstream 20566 26392889 ~ 26400884 (-) True eif4e2
XM_039816857.1 mRNA upstream 71002 26496871 ~ 26508800 (-) False gpsm2
XM_039816855.1 mRNA upstream 71002 26496871 ~ 26505301 (-) False gpsm2
XM_039816856.1 mRNA upstream 71002 26496871 ~ 26504487 (-) True gpsm2
XM_039816853.1 mRNA upstream 71634 26497503 ~ 26508800 (-) False gpsm2
XM_039816854.1 mRNA upstream 71634 26497503 ~ 26506125 (-) False gpsm2
TU158687 other downstream 1498132 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1884954 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2399949 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2401012 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2552224 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 235752 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 393969 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1245107 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1287598 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1291682 27717551 ~ 27718759 (-) True G118524

Expression Profile