RNA id: XR_005640834.1


Basic Information

Item Value
RNA id XR_005640834.1
length 2665
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120569074
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26421450 ~ 26426798 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatccaaaatctaagacgatatttactctcatatcacgatatcgatataatatcgatatattgtccAGCTCTCTGTACAACTTAGTGCTACACTGGAGAAGGACATAAATTTGCACAGACCTTCGAATTGGTCATGTTTGCCGGACAATATGAAGTTCTTAAGAATAATGCCTGCAGCTTACGTCACTTACATCAAGTATCactttatttgtcatttcaCTGAGTACTTGCATACACAGAAGAAACAAAAAGTTGTTTCTCATCAGTCACAGTGCAATAAAAACGGAAATAAATACttataagttaaaaaaaaatatcatgtCTAAAATAGAGCTAAACACAAACATTCAGACAGAACTGAATATAATACCCCAGCCAGATGTTTGGCAAGCCCAGGTCTCTATATGCTTGAAAAAGAACCACCACAAAGCAGCCAAACTGTAATTATCCAAAGTTTGAATAGATTTAAATGGCCACTTTATATAATAAACTAACCAGGGTCAAATATTAGGCCGAGGGCACTGTAGCTCCTCAAAGCGATGTTATTCCTCCCTTATGAAAAATCCGGggatcatttttgttttcttctgcaCACCACAGCACCCTTCAAATAAAGTCTAAAGGCTGCCATTAAAGTGGAGCATATGCATGTGTAGGCATGGAGTGGCGTGTGAGGCCCTTACAGGCAGACTGCAGGTCTGTTAGTCATTACGGGtgaatgtactgtacagtatacacTGGAGTGGACATGCAGCTACATTAAAGTCTCGCCCACGGCCACGTCAGACCACCCCAGAGACACACCACTGGCACTTCCTCCACCCGCTTCCACCGCTCAGCCTTGGGGGGACGCGCGCTTTGGGATTTCCGGAGGACGCACTGGACAATAATTGTCCGTTGATTAGTAAACTTTCTAGTGAAAAAGATGGTCAGATTGCCTTTTAACTGTTTTGTGTTTACATCTGATTTTGTCTTCTATCTGTAGGTGTCCCGTTAGTGCCTCCTGATGCTTGTGACTCTGTGAAGATGAAGATCGTTTTTCTATGAGATGCTGTTATGGCCAGTTTTGAAGTGAAGATGAAAGACTTTCAAGTTCCTCTGATTAATGAGGTGGTGGTAAGGCAATAAAGCAGAACCTCtgaaaaaatgaatggaaaaaaaacaaccgaaCCATGTTTGCCCTGTGGATAGTGGACTCATTCTGCCACTGTCCTGTGTCATTATGTCCCTTTGCTGTGTGACCTGTCCTCTGGGGTTTGAGTGAGTGTCCCTGTCCCCTGCTCTGTCTGTCCTCCTTCCTCTACGCCCTGCCTCGTCTTGTCAGCTCAGCTCACGGTCACAGCCCTGCTTGCCTCGGTGAACATTCAACGCTGTCGGTGAGTTTTGGTATGGATCACATAAAAACCATCGACCGTTGACTGTGCCCCGAGGCTTGCTCCGACGACGTCGGGAatgagcaaaaaataaataaaatgaaatgagcaAAAGGGCAAGTGGGCGCATGCAAAAATCGAGAGACGAAGACGCACACGTACAAAAGTGACACTCTGTTTCCACTGTACCCAAAGACCAAAGGTCACAATCAACATTCATTGCTGTCGCTGGGTTGGACTGTGTAGAAAAGCTCACTGAACAATGAGTGCAACTGTGGCCCAGATCTGCCTGACTCGCGTCTCAGCCAATCGGCCGACCGGATGCGAAAcactttgttttctttatttatattaCTTCTTGTTTTTCACTTCTATTTtctcccctcttcctccctccctggcGCTGAATAGTCTtcaggggaagagagagagagatagagacataAATAGACTTCTGGCGGCTTGCTtgtcctcatcctcctctcctctaATTGGTGGTTATGTGTGCAGCAAGGGGGAAGGAAGCGGAGTGAATGTGTAATCATTTGGAGTCTCTTCTCCTTTAGATGtttcatccctctctcttttttgtttgtctaaTTATATACTGAGCTCTGTTAACTCTGTGTTAACTGTGCTGGCAAGAATGAGCGAGTGACAAAGAGAGGGAGGACAATGGGGAAACACAAAAAGGTGGAGAGATTAGAGCACCAGTAAACGTATTATCTAGTTTTCAGTATATGTATTCTAATATTATTCCTAATGTTGCTGCAAATGTGACCGGATataagcatttatttttttaaatgcagaaagGAGATTGTTTTCACCTCTTTGGCTGAggtctcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattttcctTCTATCCCCAAGCAGCTTGCTCCCTCATGGGAAAACACAAGTCTCTAACCTTGTCTTCCTGCAGACAGTGTGGGACCGGCCACGCTGCTGCCATTTCTCTTTGTACCCATCTGTAACAACTCTCTGACACTGCGTCCTGTATCTGTAATTCATGGAATGTAAACACACAGTTGAGATATATGTAGGAATGCGTTTGGGAAAGTGTGATAATTcatgaattaattaaataaagttgaatcagAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159094 lncRNA downstream 101892 26315822 ~ 26319563 (-) False camk2n1a
TU159059 lncRNA downstream 112129 26308787 ~ 26309326 (-) True G118002
TU159052 lncRNA downstream 209707 26211508 ~ 26211748 (-) True G117995
TU159051 lncRNA downstream 210787 26210349 ~ 26210668 (-) True G117994
TU159050 lncRNA downstream 226571 26193007 ~ 26194884 (-) True G117993
TU159151 lncRNA upstream 47089 26473887 ~ 26474956 (-) True G118075
TU159153 lncRNA upstream 50665 26477463 ~ 26479678 (-) True G118076
TU159275 lncRNA upstream 105369 26532167 ~ 26601385 (-) True G118165
TU159297 lncRNA upstream 234823 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 305079 26731877 ~ 26732084 (-) True G118186
XM_039816744.1 mRNA downstream 9352 26411167 ~ 26412103 (-) True ccl20a.4
XM_039815713.1 mRNA downstream 11047 26402976 ~ 26410408 (-) False capn10
XM_039815712.1 mRNA downstream 11048 26400982 ~ 26410407 (-) True capn10
XM_039815716.1 mRNA downstream 20571 26392889 ~ 26400884 (-) False eif4e2
XM_039816857.1 mRNA upstream 70073 26496871 ~ 26508800 (-) False gpsm2
XM_039816855.1 mRNA upstream 70073 26496871 ~ 26505301 (-) False gpsm2
XM_039816856.1 mRNA upstream 70073 26496871 ~ 26504487 (-) True gpsm2
XM_039816853.1 mRNA upstream 70705 26497503 ~ 26508800 (-) False gpsm2
XM_039816854.1 mRNA upstream 70705 26497503 ~ 26506125 (-) False gpsm2
TU158687 other downstream 1498137 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1884959 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2399954 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2401017 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2552229 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 234823 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 393040 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1244178 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1286669 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1290753 27717551 ~ 27718759 (-) True G118524

Expression Profile