RNA id: TU159153


Basic Information

Item Value
RNA id TU159153
length 2192
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G118076
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26477463 ~ 26479678 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGGTGTTGCAGAGTGACTAGACTTTTTGTGAATTGTCTGAGTCCCTCCGatagtctgtgtttgtgcggCCTACACAGCACAATAATGATGATGACGACGATACGAGCAGGCATTGCATACGTCTATGATGATTACATGTTATTAACTAAGCTCCTGTGGTAGTGGAGTGATATTATGTCAGTTTAAATGAGGCCAATATTACACTTAAATCAATCATGCCAGGGATGTGAAATGAGACACCATGCATACTGTTGATAGCTGGCATTTTAATAAAGCTCAAGTAAtagaaaaacaaccaaaaccCATGAACAGTTGAGCATATTTAGTAAATTGCAAACAAAAATGGATTcagagttgaaaaaaaaaaaaaactatgatttTGTCAGTATACTTAAGGGATTTTCATACAATACCACAATAAAGCCTAATCAATTAAGACTTTATATACCTTGCCTTTGCTTTCAACATACTTGCTTCAACAACTGTACTGCATCATTAGTACACACCTCCAACAGGTCAATGTCATTACAAAAAATACTTCTTTATGCCAAAATATATCTGTACAGTGCCAACACATACTGAGGAAGAAACGTGATAACAAAAAATGTAACAGTAACgtgaaagtaaagtaaaaagcaTGACAGTCCTGAAGCGGACACAACTCAACGACAGTGGACTGGGTCTTGAAGTGCTATCATAGGTGAATTTATGTATTTACAATTGTGGACTACTTTGAGGGTAATCAAGATCTAAAAGGTAAGACAATATCCACATGAAAGTGGCATTTGAGTATTTGTTAGTTCCAACTGTAACATGAACAACAGTGATTAAATTACTCTTAAATTGCACAGAGTGATGACACAGGGTGGGACATCCATCTATTCTACTACTGATGATCGTCTTCCCAGTGATACTGTTGAGTGATCACacttttatttttgcatttataGCACAATTAAAGGCCCCAAACGACAACATACCGATACGCGCACGTGATAAATTATAAAAGCTACTAAAAAGCTACCACAAGCGGACTCGTTCATTTCCAATGGATCTGCCATCCTATACAAactaatttaacttatttatgtacagtatattatgttTCTCTGAATAAAATCTAAGATCAAAATGTCTTCAAAGCATtatcaaaatgaaataaattaagaGTCTATTGCAGGTATGCTCAACACTCTCATCATTTTCACCAACTGAGGAATTTGTACTCGTCTTGGCACTtcactatacacacacatacacaaatttgaactttttatgtttttcagtCACATGTTAAAAAACATGCCTGTATAGCAGCAAAACTAATCAAGAATGCTGCCTCTACCTGATCACAGATCAGACAGGCCACCCTTATATCAACCTGGGCTTGAGTGTGTGGGTTGAGGGGGTGGCGGGGTGTGGGGCCAGGGTTGTGATCCCAGACCTGTGAGTACACGAGCTCTCCTGTATCACAACAGACTTTTTACAACAAGCGCTGACAAAATGACACCGACACTCACAGCGCATCCATATGACACAAAACAAGCATAAGGCCACACATGATTAACTTATAGAAACCAAACATTCAGTGCTTCAGTGGTTCAACTAGGTAAGGCATTGGTCCGCCTATTGTTTTCCTCTCTATTTTTTTTGGCACATGAGAACATTGATACACATGCTGACACACAGTACACACTCGTGCCCCATTTAAGTAGTCCAGATTGTAACAACTCTGTAACAACATCAATGTCTGTGAGGCCCGCTTGTGTTCTACATTCCAGTTGTGATTTGTTACAGTGGGATCGTGCGTCCTtttaatgaaaaagtaaaatccGCAATTTCTTCTGTGTTCGTTCCAGAGAAGCGTGTCCAAAACTTCCCCCGGCCATCTGGCGCTACTTAGTGTGCAGTTTTTTGGGCGTCCCCTGCTTCTTGGTTTGCCACAGATGGCTGGCGATGGTGATGGCGTCCACACTGGCGGACATGGTTTTGGCTGGGATCTGGCTGAACTGCTTCCTGTCCGAGTTGTACTTGTACAGGCCCTCGATCATCTTGGTTGTGATGCTCTTGGGCCCGATGCCGGCCAGTTTGGTGATCTCCTCCGTCTCGGGGCAGTAGGCGTACACGGACCTGAACTGGCATCCGGCATCACGGAACAACACAAGGAAGTTATTGGCTTCGGATTTCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159151 lncRNA downstream 2507 26473887 ~ 26474956 (-) True G118075
XR_005640834.1 lncRNA downstream 50665 26421455 ~ 26426798 (-) False LOC120569074
TU159131 lncRNA downstream 51594 26421450 ~ 26425869 (-) False LOC120569074
TU159132 lncRNA downstream 52536 26421450 ~ 26424927 (-) True LOC120569074
TU159094 lncRNA downstream 157900 26315822 ~ 26319563 (-) False camk2n1a
TU159275 lncRNA upstream 52489 26532167 ~ 26601385 (-) True G118165
TU159297 lncRNA upstream 181943 26661621 ~ 26665181 (-) False G118175
TU159313 lncRNA upstream 252199 26731877 ~ 26732084 (-) True G118186
TU159466 lncRNA upstream 480722 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 480722 26960400 ~ 26963752 (-) True G118308
XM_039816744.1 mRNA downstream 65360 26411167 ~ 26412103 (-) True ccl20a.4
XM_039815713.1 mRNA downstream 67055 26402976 ~ 26410408 (-) False capn10
XM_039815712.1 mRNA downstream 67056 26400982 ~ 26410407 (-) True capn10
XM_039815716.1 mRNA downstream 76579 26392889 ~ 26400884 (-) False eif4e2
XM_039816857.1 mRNA upstream 17193 26496871 ~ 26508800 (-) False gpsm2
XM_039816855.1 mRNA upstream 17193 26496871 ~ 26505301 (-) False gpsm2
XM_039816856.1 mRNA upstream 17193 26496871 ~ 26504487 (-) True gpsm2
XM_039816853.1 mRNA upstream 17825 26497503 ~ 26508800 (-) False gpsm2
XM_039816854.1 mRNA upstream 17825 26497503 ~ 26506125 (-) False gpsm2
TU158687 other downstream 1554145 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 1940967 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2455962 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2457025 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2608237 23869155 ~ 23869226 (-) True trnap-agg_8
TU159298 other upstream 181943 26661621 ~ 26665952 (-) True G118175
XR_005640672.1 other upstream 340160 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1191298 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1233789 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1237873 27717551 ~ 27718759 (-) True G118524

Expression Profile