RNA id: TU159201


Basic Information

Item Value
RNA id TU159201
length 439
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G118115
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26602656 ~ 26674451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgggggggggggggggGTGGGGATCAAGAGTTAGTGTTATAGTTAGTGTTCGCATGGACCTTGGTTAAAGGAAGCAGGGTGAAAACAAAAAGAATTTTCCAAACACCCAAACTCAGAGATAGGGGTTATGGAGATAAACTGTATGTTAGAGTAAGAAAACCGTAATAATCAGGAGGAATAAAGCCAAACGGAGCATGGTTAGAAGCAGGAAAAAGTAGTGGGGCGGGTGATCTGAACTACTGTCTCTCTTTATGGGCCATGGTTAGCACCTAGGCTTTGCAgatgtgatattatttggtTCAGTAGTAGCTGTGTGCGTCCTGTCTGGCCTTGTGTCCCTCTCCTCCGTGTCTCCTGTGGCCGCGACGTTCGTTGTGCTGATTGTGATGGTGGCGTCGGTACCGGTGTGACCGCCGGGCTgaaagtagagggagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159181 lncRNA upstream 1247 26532166 ~ 26601409 (+) True G118095
TU159180 lncRNA upstream 1288 26532166 ~ 26601368 (+) False G118095
TU159119 lncRNA upstream 105854 26421454 ~ 26496802 (+) False wdr47a
TU159118 lncRNA upstream 106815 26455031 ~ 26495841 (+) False wdr47a
TU159066 lncRNA upstream 288026 26314265 ~ 26314630 (+) True G118009
XR_005640824.1 lncRNA downstream 69290 26743741 ~ 26754418 (+) False LOC120569009
TU159236 lncRNA downstream 69311 26743762 ~ 26763260 (+) True LOC120569009
XR_005640821.1 lncRNA downstream 106916 26781367 ~ 26784724 (+) False LOC120569008
XR_005640822.1 lncRNA downstream 106916 26781367 ~ 26784724 (+) False LOC120569008
XR_005640820.1 lncRNA downstream 106917 26781368 ~ 26784724 (+) True LOC120569008
XM_039816625.1 mRNA upstream 2722 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA upstream 2722 26590796 ~ 26599934 (+) False prkab2
XM_039816626.1 mRNA upstream 2722 26591010 ~ 26599934 (+) False prkab2
XM_039816370.1 mRNA upstream 14085 26580603 ~ 26588571 (+) True LOC120568699
XM_039816421.1 mRNA upstream 37011 26559608 ~ 26565645 (+) True LOC120568740
XM_039816801.1 mRNA downstream 117751 26792202 ~ 26813425 (+) True LOC120569005
XM_039816798.1 mRNA downstream 117751 26792202 ~ 26813425 (+) False LOC120569005
XM_039816802.1 mRNA downstream 118009 26792460 ~ 26813425 (+) False LOC120569005
XM_039816799.1 mRNA downstream 118088 26792539 ~ 26813425 (+) False LOC120569005
XM_039816800.1 mRNA downstream 118218 26792669 ~ 26813425 (+) False LOC120569005
TU159178 other upstream 2584 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 184648 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 200578 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 200578 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 385615 26215727 ~ 26217041 (+) True LOC120568800
TU159241 other downstream 91041 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 209108 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 927573 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1482522 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 3293962 29968413 ~ 29969850 (+) False LOC120567689

Expression Profile