RNA id: TU159236


Basic Information

Item Value
RNA id TU159236
length 1887
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120569009
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26743741 ~ 26763260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGTGTGAGGGAGAGGACACATGCGAGTCTATAGAGAGATAGGACACTTTGTAGCTTGAATACTCTGCTCTTTTACACCATTTTCTCTCATCGGGTGCGATCAGACACACAGGCTCTGATAACACGGAAAAATCCAAGGCGGAATTTGAAATAGTTGGAGGATATTGACTGTAGTGGAGTGGAGTTATAGCCTGATGTGCAAGAAAATGCCGCCAATGTCAGCCCTGAAGTTTGCGTCAACTCCCAATGAGAACAAATTGCCACCAGACAGGATGAGGAGCATCAGTCAGCCTGAGATGGAAACACGGGTGGGTGGTTGGAAGGCTGGATAAAGGCTGGTAGATGACTGAACTCAGAGACCCGGCGCAGCTCATCATCATTGCCATGGGCTctcgtcttcctcctctcctcctgtggCCCATACCTCCATCCAGGGGTGCAGCAGACCAATGTGAAGCCCAGGCGGGGAGCTAGTGAGTGGGCTGGGAAAGATGGAGAAGGTCCCTGAAGGCTCGAAGCACCTCTGGAGCTACCGGCATGCAGGAGAAATCAATATAAAAACACAGAGCACAGCTCTGAGTGGGGCTTCCTGTGTTAGTCTGTGGCCTAGGGGCCCGCAGACCTCCAAAGGACAGGCCCTGTGTGGCCCTCTCAGCTGCAGCCCTGGCTCCTCAGACTGGACCTCAGTCCCAATCTTCACTGGCTGTGTGTGGTTCTGCTGAAGGGGATCTCTCCCCAAATAATATCCAGAATGTTGAGGGACCGCCGACAGGGATATTCCTTTctcttgatttttttccccccttcatAAGATTGACATATCCCCCACCTTGTGCCTCCggctgtttaaaaaaacagtttggGAGTGCTGCTTTTGACTTACTCTCCAAGCTCAACTCGCCCGTTGTTTATTCCCCAACCAGTTTTTACATTTGACAAAGAGACAGTACcgtctttattttctcttccACTCCTGGCTTGCTGTTACTATGTTGAGCTGTAACATGTGTCTGTTAAAACCGAAAAGATTACTGGCACATGAAGTatgatcatcttttttttttttttctccgtgaTGTCTGTTATTCAATTCCAGACcgttaaagacaaaaaaaattgactGAATAAAGAGGGAAAAAGATGGCAGAGCAGAGAGATTTCCCACCTTGTAGTGGAGATGGCAAAATGATTGGTGACGGTGCAAAATCATTGATTGGCTGAACAACTTTTGACTCAAAGAAAAGGATTTCGGGCCCAGATTGGACTGGACTCATTTAAccatttttgttgattttttttgctGAATAATTAAAGTTTCtgacattaaacattttacaaTGGACTGTCCCCTACTTtgtctctgaacacacacacacacacacacacacacgtaatagTGACACTACTCTATAAATCCAAGGAAAAGACACTAACAAAGAGACTTTGAAAAGGATTTTCCTTTCACCAGCTGTACCTTAAGATGTGTTTTTCCTGTTACCAACAGCACCTGATGTTTGTGGGTTAATAATTCATATATTcaaatgattttatttttctaaatatagGAATGATGATGCTAATTGATGTTAGCTGATATCTGATTAAATACATCCATGCCAGGCTGTCCTGTCTATCCTGTTGTgcgttttggaaaagtcattgTGGGTGTGGaagtgtttttttatgatttgattttttattaaaagtccCAGCGTACACTTCATACTGTGTCTCAGTGTATTGAATCTGATTCAGCTGAATGGAATCTGTTGATGAACACCCTGAGGTGTAATTTACGTTGCTGTacaactttgtgtgtgtatattgggTGAATCTATATGTGGTCAATAAAGAGAACATCGACTTTGAACATTTTTCTCCAGTg

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159201 lncRNA upstream 69311 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA upstream 78918 26662282 ~ 26664844 (+) True G118135
TU159184 lncRNA upstream 138678 26548656 ~ 26605084 (+) True G118098
TU159181 lncRNA upstream 142353 26532166 ~ 26601409 (+) True G118095
TU159180 lncRNA upstream 142394 26532166 ~ 26601368 (+) False G118095
XR_005640821.1 lncRNA downstream 18107 26781367 ~ 26784724 (+) False LOC120569008
XR_005640822.1 lncRNA downstream 18107 26781367 ~ 26784724 (+) False LOC120569008
XR_005640820.1 lncRNA downstream 18108 26781368 ~ 26784724 (+) True LOC120569008
TU159254 lncRNA downstream 18130 26781390 ~ 26784450 (+) False LOC120569008
TU159255 lncRNA downstream 18130 26781390 ~ 26784450 (+) False LOC120569008
XM_039815839.1 mRNA upstream 71504 26666504 ~ 26672258 (+) True zgc:85843
XM_039816625.1 mRNA upstream 143828 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA upstream 143828 26590796 ~ 26599934 (+) False prkab2
XM_039816626.1 mRNA upstream 143828 26591010 ~ 26599934 (+) False prkab2
XM_039816370.1 mRNA upstream 155191 26580603 ~ 26588571 (+) True LOC120568699
XM_039816801.1 mRNA downstream 28942 26792202 ~ 26813425 (+) True LOC120569005
XM_039816798.1 mRNA downstream 28942 26792202 ~ 26813425 (+) False LOC120569005
XM_039816802.1 mRNA downstream 29200 26792460 ~ 26813425 (+) False LOC120569005
XM_039816799.1 mRNA downstream 29279 26792539 ~ 26813425 (+) False LOC120569005
XM_039816800.1 mRNA downstream 29409 26792669 ~ 26813425 (+) False LOC120569005
TU159178 other upstream 143690 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 325754 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 341684 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 341684 26399420 ~ 26402078 (+) False G118011
TU158989 other upstream 526721 26215727 ~ 26217041 (+) True LOC120568800
TU159241 other downstream 2232 26765492 ~ 26769911 (+) True G118149
TU159378 other downstream 120299 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 838764 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1393713 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 3205153 29968413 ~ 29969850 (+) False LOC120567689

Expression Profile