RNA id: XR_005640821.1


Basic Information

Item Value
RNA id XR_005640821.1
length 2488
lncRNA type inter_gene
GC content 0.40
exon number 8
gene id LOC120569008
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26781367 ~ 26784859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGTTGTTATTCCTCTTGCTAGCTTGGCGCTACCGTGGGGGCGTGGATGTGTAATAAGAACGGATTGAGGTAGAAACCCTTTTTAAAGTCTATGGCTAGACATTGACAACGTGAGAGACCAACTGTAGGGACAAATTCGGCAGACGTTGGTCCAAAGTAAATTTGGTACATTTTGTCGTTGTTTTGTCTTCCGCTGAGCCCTGGTGCGTAGCCCTGCTGGGCTTTGCAGAACGAAGATCGGTCTGTGTGTCCACTGTGTGCAGGCAGTGTTTCAGTACAAGCCGCCTCCTAGGGTCAAGGCCCGGGACACAGCTCCAGCTACGCTCGGTGCTATATCGACAACACACAAAGAACAGCGAGCTGGCCCAAAACTCACCTGGAGAAAGCGGTGCGGAGTGTCTGACGCCAGGCTGTGGTACAATGAACTACTGATATAGTTTATGATGCAAAACATGTCCACCAATATGTGATGCTTTTCTATCAATGTCACCAGCTCACTGTCAAAACCCATGCCCAGTGTGATGCTGACACTCATCTTTGGCTTTCTTATTGTCAATATAAGAAGTAGGCCTATCCTTTTTTGCGTATAATGAAATAACACAGAAACTAACACAAGATGAGAAGTTTGAAGAAGCAAGTATTCTATCAGAGTTCTGCTGTCAACCGAACTTGGTGGACTCTGCTAAACCAGTGCTGCGGAAGGTCATCCAGATTTCTGCAGACTGCTTTTTCAGCTGGCAcaACTACATGCACTGGAGAAGGACTTGATATCTGCCTGTGATCTCCTCTGAGTCGGAGCAGAGTATGCAAGAGTCATGTGCTTAGAGTAGACAAGAGCTCTGTTTTTACTAAGTAAAGGAATGCTGTACAGCCTTCTAGAGAGGATTAATCCTGATCACAACTTTCCTGTCAGGACCACATCGCAGCCTGCAGCCTCCCTGAACACCACCTCATCCGTTGGACAGACGGTTTCCGCCTCAGAATGGCCCTGCTACCAGCCTGGCCAGCCTGCTCTGAGATCAAAACCCCACCCTGTCTGGGAAAAGGAGACACAGAAGAGCAATTGCTGggaaaatgacataaaaaagaTGAACTGAAAACAGGTGAAGCAGCTGATAAAAGGGTGAGAAGAAGATGGGGCATTATAATGAAATTGTGTCATTTGGCAGGCTTTCATTCAGGGCATTCCTTCACCTATTTGGGGCACTGGGCCATGACTGGAATGTAAGAAATCTAAGTTTGTTTTGGAAAGCAAAAGCATAATTTATTGAACTGAAACACTTTGAATTGGTTCTAATAGTTTGTTCTACTAGACCAAAAACAAGTTCTTAAAGAAGATGAATACAACTTTCATACGTGTATGTATTGTAAGTATAAAACTAGCTTAGCTTACTtggcacaaagactggaaacagggactCCACAGGGAACCTTTAAGTTCAGCTGATTTGTCCCACTCATTTAGCTTATGTGTTCACTCTTTCTTTCTCGACCATCATGGAGGTACTGTTATTTTGGATGACATGAAATAGAAATGTTCAGAGAACATTAAAGATTAAATAATCTTAAATTACTGTTGAATTTAAACCATCCATTGGCCAAATGTCAAATGTGACTCAGTGTATTCTTGCACATGAACTCAATATCTGTCACTGTTTGGCTATATTCTGACACACAGTATTAGTTAGGATACATttggatatacagtatactataTATCTGTAATGATCTTAATGTAGCATAGTGGTATGTTCGGTATGTACTTGGCAGCTGCATGTAGTTTATTAACTGAAGAGGAACAAATATGAGCATTCATGAGATTAAAGACAATTTAAGATTATATTAGATTTTGCTAGACCCTGGAACCAGTTGACCATTTAATAGTCAGGCATTTAAGCATTTATTAATGTTTTGAAGGCATTGAAAGTGtactttaaatgtgttttgagACGTTGATGCATCAAAAAAGTATTTGGATAATTTTTGGACACTGCAATTCAGTTGACTTGCTGCCTGACCTTTGGATTTTTGCCCTTTCACTCTCACTGGGGTGGTGTATGTTTATATGCTGTGCACATTTTGTGTGGAGTCAAGAAACCAGTAATAATTAGatgtatgatatatgtgttttatgatgaaacatatatttttttaatctttttggaatcattttttttctcattgtttTACTCATGTCTTCCAGATGATGGCGGTATAAATCTGTATTTAAATaccttatttatttaatgttacTTTTCACTATACCAGatgcagttgttgttgtttgctgATTACCGTTTGATTTATTATCAAATAACTGGTAGGACTGTCGATTCAGTCCCACTAATGTAGGAATGGTGTATTTTTAGTTTTCTCTATGaagacatttattttacagatttgtgCGCTGgtagtttcaaaataaactgCTGAGTTTGGTATTTTGCAAAGTAATTACTGCAATAAAACCTATGTTATGGATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159236 lncRNA upstream 18107 26743762 ~ 26763260 (+) True LOC120569009
XR_005640824.1 lncRNA upstream 26949 26743741 ~ 26754418 (+) False LOC120569009
TU159201 lncRNA upstream 106916 26602656 ~ 26674451 (+) True G118115
TU159223 lncRNA upstream 116523 26662282 ~ 26664844 (+) True G118135
TU159184 lncRNA upstream 176283 26548656 ~ 26605084 (+) True G118098
TU159272 lncRNA downstream 36519 26821243 ~ 26824078 (+) True G118164
TU159273 lncRNA downstream 36519 26821243 ~ 26824078 (+) False G118164
TU159356 lncRNA downstream 69918 26854642 ~ 26857394 (+) False LOC120567599
TU159368 lncRNA downstream 93831 26878555 ~ 26938821 (+) False LOC120568791
TU159409 lncRNA downstream 183780 26968504 ~ 26968990 (+) True G118263
XM_039815839.1 mRNA upstream 109109 26666504 ~ 26672258 (+) True zgc:85843
XM_039816625.1 mRNA upstream 181433 26590782 ~ 26599934 (+) False prkab2
XM_039816624.1 mRNA upstream 181433 26590796 ~ 26599934 (+) False prkab2
XM_039816626.1 mRNA upstream 181433 26591010 ~ 26599934 (+) False prkab2
XM_039816370.1 mRNA upstream 192796 26580603 ~ 26588571 (+) True LOC120568699
XM_039816801.1 mRNA downstream 7478 26792202 ~ 26813425 (+) True LOC120569005
XM_039816798.1 mRNA downstream 7478 26792202 ~ 26813425 (+) False LOC120569005
XM_039816802.1 mRNA downstream 7736 26792460 ~ 26813425 (+) False LOC120569005
XM_039816799.1 mRNA downstream 7815 26792539 ~ 26813425 (+) False LOC120569005
XM_039816800.1 mRNA downstream 7945 26792669 ~ 26813425 (+) False LOC120569005
TU159241 other upstream 11456 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 181295 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 363359 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 379289 26395426 ~ 26402078 (+) True G118011
TU159071 other upstream 379289 26399420 ~ 26402078 (+) False G118011
TU159378 other downstream 98835 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 817300 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1372249 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 3183689 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3784671 30569395 ~ 30574881 (+) False LOC120568595

Expression Profile