RNA id: TU159298


Basic Information

Item Value
RNA id TU159298
length 1624
RNA type TUCP
GC content 0.43
exon number 3
gene id G118175
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26661621 ~ 26665952 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACATCTAATGCAACGTTATCTTCTGTAACAAAGCGGCTGAAGAGGattatgctgctgctgctgctgcttccacAGAAACGTAGCAGCCAGTGGAAAGAGAGAGTCAAGAGGGGTGGGGAGTCCAGTGTAGAATCGGACAGAGAACATACATACAACCCTTCACCCACACAGCAGACACTCAAGTTTTTTGAGGTGACACAGATTCTTGAAGAGTCTGATGCAATGCTGCACCCTTTAATCATCGGCATTATTACCGTAAACACCTCTCTAACAGTGGTCTACTGGGCCTTTGTCCTGAGCGATGTCTACTACAAGTGGCTGTCGGAGGCAGAAGACAAACCCAAGAAGTCGGTCACCCCGGCCTGAGGGAGTCACAGTCAATATGGACTGACTGAATTACTGGGtgttttgttctctttttttttgtgcttagTACTAGTGAGCAAGAGCAGTTCAGCTTGTAGTGCTTTCTGTGAGTCTGATTTTGGCTTTCTGTTTTACCTGGAGAGGACTTGGAAACCATACTTTAAATGTTTTACTGAACTGAATGGATCCTGCAAGTTAATAAGAAAGGAGTCCTTCTTACAGAGCCATCTGCGTATACGACACACACGCCAATTTGGAACTCCGTTCATTCACAAGTCAAAGAAAAGAACTGAGGGGCCGTTTCAAGTCTTGATTATGAGACTGGATTCTTGGCCCTAAACCAGTGGAGGATGATTCAGAGGAAGGGAGAGCAGAAATAGAAGAAGAGCGGCGAGTGAGCGTTTACAGTACGATGGAGAAAGACCGGCTGAAGATGGAGAAGGAAAAGGACGGGCCGCTGCCCGGTTTCTACCGGGGAGATGAGGGCCGCGGTCGTCcatccacccctcctccactgAGAAGCGCCATCACTTCATCATACCCCGGAGAAAAAAGGATGTCTGCTCATAGTGTGAGCTTCGCCTGCCCCATGACCCCGTATGCCACTTCCCTTTGAGTTGTCACTCTGTCACAGCTGTAGTTCAGATCAGTTTTTGTCGCATATCTCCTTCCAGTCAACAATGTTGTGACTTTGCTGTAGTGATGCATGCATAAGCTAAAGCATTTTAGTTCAATATAAAACAATGTGCTCAACACTTGTAGTTTGTACTCATAAGAAACAAATGCTTACTTTTGATTACTTACTAAAAATGGATGTAAACATGGTTCATTCAATATACATTCCACTATATCGTTGTTTGCTGCCCATCAATTTCTCATGCGAAAAGTATGTAAGCTATCTTCAAAGATGTTGATGTGAGatgtaaaaaatacattttctttcaatAACTGCCATTTAAAATCCAAAGATTGTGTAACTCGATCAAATATGTATAACTTTCATGACAAAGTGTAGCAAAATTGCATATGAATTGCCATTTTTGTGCATTTTCCTCACCGACCTGTCAAACTGCAATAATAACCGCAGTTTTTCCCCTTACATCGCATTCTGTATATTGCTGTGAAGACAAACATGTCGGTGTGATCTGTTCTGGTGTTGGACTAAGCTTCTCTCCATTAAACAACTGAATAATATAAGAGTGACGTTTGTCTTGTCTGTGTCCTTTAATCCATCTTACCTTCCTCTAATACCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159275 lncRNA downstream 60236 26532167 ~ 26601385 (-) True G118165
TU159153 lncRNA downstream 181943 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 186665 26473887 ~ 26474956 (-) True G118075
XR_005640834.1 lncRNA downstream 234823 26421455 ~ 26426798 (-) False LOC120569074
TU159131 lncRNA downstream 235752 26421450 ~ 26425869 (-) False LOC120569074
TU159313 lncRNA upstream 65925 26731877 ~ 26732084 (-) True G118186
TU159466 lncRNA upstream 294448 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 294448 26960400 ~ 26963752 (-) True G118308
TU159486 lncRNA upstream 414055 27080007 ~ 27142908 (-) True G118321
TU159494 lncRNA upstream 453080 27119032 ~ 27190233 (-) True G118328
XM_039815104.1 mRNA downstream 8663 26604861 ~ 26652958 (-) False LOC120567967
XM_039815103.1 mRNA downstream 31512 26604861 ~ 26630109 (-) False LOC120567967
XM_039815100.1 mRNA downstream 31512 26604861 ~ 26630109 (-) False LOC120567967
XM_039815099.1 mRNA downstream 31512 26604861 ~ 26630109 (-) False LOC120567967
XM_039815098.1 mRNA downstream 31512 26604861 ~ 26630109 (-) True LOC120567967
XM_039816685.1 mRNA upstream 8081 26674033 ~ 26715435 (-) True LOC120568933
XM_039816684.1 mRNA upstream 8081 26674033 ~ 26707635 (-) False LOC120568933
XM_039816806.1 mRNA upstream 99529 26765481 ~ 26772945 (-) False LOC120569007
XM_039816805.1 mRNA upstream 99529 26765481 ~ 26772945 (-) True LOC120569007
XM_039816804.1 mRNA upstream 111085 26777037 ~ 26781098 (-) True armc6
TU158687 other downstream 1738303 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2125125 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2640120 24021439 ~ 24021501 (-) True LOC120569138
XR_005640840.1 other downstream 2641183 24020362 ~ 24020438 (-) True LOC120569137
unassigned_transcript_562 other downstream 2792395 23869155 ~ 23869226 (-) True trnap-agg_8
XR_005640672.1 other upstream 153886 26819838 ~ 26824570 (-) False cirbpa
TU159721 other upstream 1005024 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 1047515 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 1051599 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 2320139 28986091 ~ 28986319 (-) True G118764

Expression Profile