RNA id: XM_039814505.1


Basic Information

Item Value
RNA id XM_039814505.1
length 4450
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC120567599
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26839178 ~ 26857394 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGTGGGTGTGTCTAATCGCGTGTGGTTTCATTCATAACTACAGTCTTCATTTGAAGCCCAAATTAAAGTATGCAGACGGGGCAGGCTGCCTGTGGACCGTCGCTTCAAACGGAGTCTACAGCCGGGCTGAGAGCAGACGACGCAGAGATGTGGGACAGTCCTGATCGGCGGGTTTtcgaaggagagaggaagatgctgctgatgctgatgctgaggctgctgctgctgagcgcCGCCGCCGGCTGCAGCGGCTCGCTGTAGTCAGTCTGCACAGCGGAGGGAAGCTGCTCCAACACCGCCTGCATAGACCGGTTCACACACGCTGACCTGGACCATGAGCAATGATTTGCCTGTTCTGACAAGTCTGACTGAGAACTCCACTGATGTGCCTGTGTCGGCGGGCCAGGTGGACAACTATGTGCTGCTGTTGGTGCTGCTGAGTGTTTTTGCCGGGGGGACGCTGGTCCTGCTCTCCCTGCTGCTCCTCTTCTGCCACCGCTGCTGCATGGGTGGACGACGCTACTCCAGAGCGAGCGATGACCCTGAGAAGACAAACACCACTTATGCTGAGGATTCTCAGCCCACCCAAGAGATCACCATTCATCTGGATGAATCAGACGCTCTCTCAGCTGCGAGCTGTCACGATGGAGAGACAGAACGATTTGTCTCCACTGGGTCTACGGGCCGCAGAGTCTCCTTCAATGAATCTGCACTTTACGAACTGGAGAAGACGACCCAGGACAAAGGACGCAGGTACACCCTGACTGAGGGGGACTTCCACCACCTGAAAAAGGCCCGGCTGACCCACCTTCACCTGCCTCCGGCCCCCTGTGACCTGAAGATCCTCACCATCATGGAGTGTGACTCAACAGAGAGCAGCACCGTCAACATCAATGAGACAACAGCTCCCAAACTGCCCCTCACCATCTACCAGCTCCCTGAGAGAAGAGTCCCCGACTGGGTGGGACAGAGCCTCAGTGGAGGTCTTCCTGGGGACCCGCACCACTCCACCATCCTGGACCAGGGCACCAGACAGACATCGTCAGCCATGAAAGTACAGCGCACACGGTCCCAGACAATGGAGGCTATCGGGGACAGGGGAGAGGCTGAGAGCGAAAGGGGGATGAGAGGAGAGTTGACTCAAGCTCCGGGCCAGACTTTAGTTCTACATTTCTTCTCTAAACTGCGGCGCCATGCCAGTCTGGAGGGGGCAGGGCCTTACTTCAGAAGGTGGAAGTTTGACAGCAGTCACCGGGCTGCCAGCCTGGATGCCAAAGGGTCCCCCAAGAGAAGGCCCttccagagacagagagcagcaagTGAAACCACTGATCACAGCGAAGACGACTCTTTGTCTCTCCGAGATGACGTCATTGACTCTTTCCCACAGTCCCCCATCCAGACCAGTGGCCTCCAGTCCCTCTCTGCAGAGTCTCTGTCCCACGCCGACACTGCACCCACGTCCTCAGTCTTCCTCAGCAGGTTAAAAGTAGAGGCCACGGTGGAGGTAGGTGGTAGCAGCACCGATGCCAGAAAAGAGGATCTCTATTCGCCATCGAATGATTGTCGCTCCCAGAAACATGAGGAGGCCACAGCCAATGGGACGGGggtagaaaaacaaacaaagtttgATGCAGTTATAAGAACAAAAGCAGCGGGAGTCGAGCTGGAAGCGGTAGAAGATGACGACTTGTTTGGAGCGCAACAAAGAGATGCCGTACAGGAGAGGTCTAAAGACATGACAAGGACAACTAAAGACGCCAATACATCAGATGTGAGGAAAAAGAGCGAGGCAGAGGCAGATGACGGAGATGAGGGAGTGTTGGGGGCTGAGGCCAGACGAAGGGCCGACTCAGGCTCATCCCTTTCATCCATGAATCGCCAGGGGAGTTTGGAGGCTCCCCCCTCCCTGTACAGAGACATTTGGAGCTTGCGAGCCTCTCTGGAGCAATACGCCTCCTCAGACCAGAGCAGCACCGATCGGGAGTCCATCCGCAGCGACGCCGACAGCTCTTCATCTTTCGATGGTGCCGGAGCTCGCTCTGGCCTGGACAGCTGCTTCAGGTCCCAAGACCTGGACGATGAGCCGGaagaaggggagggagaggtgTTGGAGGGAGGGACCAGAGGGGCTTCAGGTGGGGACGGTGAGATGGGAAGTGGAGCTGGAGGAGAGGGTGAGCCAGGCAACCGTAAGCTCCTCCAGATGGACAGCGGCTACGCCTCCATCGAAGCACCATCCAGGGCCCCGGAGGAAATGAGGCTTTTTGGGACTCCCGGAGCTCCTAGAGTGAAGACGGCGTCCGAGAGAAGGCTGTTCTTCACCAGCTCTGGGAGGAAAGGTTCGGTGTGCGAGAGCATCAAGGCCAGGCTGTTtcaggaggagctggaggatgagATGGCGGACAGCACGGAGGAGAAACTTAGGGAGAGATCTCAAACTGGCAGCCAGTCTCTTACCCTTCAAGAACCACACGAGCCTCTGAAGTCCCTTCATCCTCAGAAACCTCCAGAATCACAATCCCAGCTGATGTCTCCGCTGATGAAGCCAATCCCACAGCCATCGAGTCCTCACAAAACCCGTCTCCGCCGCCGCGACTACAGCATCGACGAGAAGACGGACGCTCTTTTCAACGAGTTCCTCCGGCACGATCCCCGATTCGACCAGCAGGATTCTCCGCTGCGCTCCAGGCACCGATCCAGAGTTCACCTCCGGAAACAGTGGCAGAGACACAAGCAATACAGCGACCCAGGGTCAGGCGCCGGGGGTAGGTACTCCCCATCTTTGGAGAGGCAGAGGTTCACTCCGCTGCGGAGAGGCGACAGCGCCAGTTACCCTCTGGACACCAGGTATCACAGCACGCTCTCACGCATCGCGAGCGCTGCCGACGAAGAAGCCAGCGAGGTCGCGGCTTGTGAGGAAGCAACCAAAGAGAGCACAGAGGACAAAGACCCGTCAAGTGAAGGCGCCGCGAGGGACGCCACAGAAAGCAGGCCTACAGCCGACACAACCTCTGAAGGCACTGATGCAACGAAGAGTTGTGCAGAGTCGACCGATGAAGGTAATGGCTGCCAGGCCTCTGCGAAAAAGGACGCAGAAAGCACAACTAGCCAGTCTTTGACCACTGTGACTACGCAGATGATCCACATGGATCCGAGAGCCAACaacagaaacaacaacagcagtcaAGCTATTCTAACAGAGAGCAGCCTGACAGACAAGCTGGTCGCGTCGGTGGAAGAGAGGCTCTACGGCGGCCTGCGCAGTGCAGAGAAGCTCGGCCAGGCAGGAACGGAGCACGTGGTTACTCACGCAGCCTCGCCTGGCTTCCACTCCATATAACCTGATAACAATCTGCAACTTTATTTCAGATCCATTATCTATAATcgacagacagaaacactggTTCATAGAACGTCAAACATCATCATGTGCTAGATACTTGGTCAATCTTTGTGTCCCttacatttatttcaaaataaacataGCCTAACCGATGCATCAAAACACAAGATATATCCTAAAGGAAAGAAGTACCTTCTTTCTTGATGGCCAGTCTCATCCAACATTTCCATTTAGACCTTAATTTCCACTGTGACGCCATGTGACACGTGATgaccttccccccccccttttttttttattggtaacCATTCTTAAAATCAAATGCATTCATTACATTGCTTTGAAAATATAGACCCATCTTTAGAAATGAAATATTTTCAGACTTAACTGTGAATTTTCAGCATGCTACTGTATGTCCAAACAATGTGTATGTGAATACTGTACAGTTTTAactttaaaacaaaaagcaCTTTGATGGGAAGAAAGATAATTGAGTTTCTGTCACCCATTTCTCTCATTTTAAAACTATATCCTCCTCAAGTGTCCTTGTCTCAATCACCACGAGTGTAAATCTCCATGAAAGCTTGTGGTTTCTGTATTTGGCAATAGGAAGAACACTGACCatgtaaaaagaagaaaaaaaaaaaaagttcttcaGTGCTCGCAGCCCGCTCTCATTAACACCATAAAAGCAGATCTGGAGAATGCACACACTAGGCCTATTAAGTGAAAACAGATGGGATGCCCAGACTATACAGCCAACACAACGGTTGAAAATATGTGAATCAAGAATTCATTTAAActcatatttcatttattttcagagGATTTTGTTAGTCATTTGTCCCAATTATTCATCATTATTAAGGAGGCGGTATCCAGGAGCTTCCGTGGGCTCGAGCAAAGGAGTTTTGTATCACTGCTGGGACTCTGCTGAGGGGCAGACTGACTGGGGATACTGAAGTGACTGACACAGGAGCCTCTCAGGCTTTTAAACAGATGGTCCAATGACAGAGTTGAGGCTGTGAAAGTTGAAACTAAAAAGCAGCGGCATGGGATATACTTACTCTGTATTACCAAATAAAAGATAAGTCTGATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159272 lncRNA upstream 15100 26821243 ~ 26824078 (+) True G118164
TU159273 lncRNA upstream 15100 26821243 ~ 26824078 (+) False G118164
TU159256 lncRNA upstream 54319 26783045 ~ 26784859 (+) False LOC120569008
XR_005640820.1 lncRNA upstream 54454 26781368 ~ 26784724 (+) True LOC120569008
TU159368 lncRNA downstream 23682 26878555 ~ 26938821 (+) False LOC120568791
TU159409 lncRNA downstream 113631 26968504 ~ 26968990 (+) True G118263
TU159413 lncRNA downstream 121425 26976298 ~ 27055691 (+) True G118265
XR_005640817.1 lncRNA downstream 164973 27019846 ~ 27021109 (+) True LOC120568996
TU159446 lncRNA downstream 308089 27162962 ~ 27177206 (+) False tcf3a
XM_039815551.1 mRNA upstream 20161 26815684 ~ 26819017 (+) True ndufa13
XM_039816794.1 mRNA upstream 25753 26792826 ~ 26813425 (+) False LOC120569005
XM_039814509.1 mRNA downstream 36062 26890935 ~ 26899765 (+) True LOC120567603
XM_039814510.1 mRNA downstream 36062 26890935 ~ 26898854 (+) False LOC120567603
XM_039816497.1 mRNA downstream 48668 26903541 ~ 26938882 (+) True LOC120568791
XM_039815927.1 mRNA downstream 103793 26958666 ~ 26963795 (+) True LOC120568413
XM_039814495.1 mRNA downstream 138330 26993203 ~ 26997296 (+) True sf3a2
TU159241 other upstream 69267 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 239106 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 421170 26416508 ~ 26418008 (+) True ccl20a.3
TU159070 other upstream 437100 26395426 ~ 26402078 (+) True G118011
TU159378 other downstream 28686 26883559 ~ 26886030 (+) True G118234
TU159680 other downstream 747151 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 1302100 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 3113540 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3714522 30569395 ~ 30574881 (+) False LOC120568595

Expression Profile