RNA id: TU159429


Basic Information

Item Value
RNA id TU159429
length 1555
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G118280
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27252543 ~ 27255349 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GttgtatgtttttattaataCATCCACTGAACAACGGTCGAATGCAGGGAGTTGGAATTCTGTAACACTTTCTTGTGGCTTTTATAGTTTTATCTGGCCAAGGATCCATGTTAATATGCATTATTGCAGCAGTATCACAGTGCACTGTAAAGGCCCATCCTGGCAGAtaagagggggggaaaaaaagggggaagatGTGGAGGAATAGAAGAAACAAGGAATACAACTGCTTTGATCCAATTGTTCCCCCAAACCCTCACCCTAGGCACTTGGTGTACTGTAGctgtgaaatgaaaaaaagcatcactGCTTCCACTAGCCTACAACAAAAGTTTAAAGCTTTGTTTCTGCTCCGGACTCAAAGTCAAAACAATTTGTGCGATGTGTCTTTAAGCCTGTGCAAAGATTTAAAGTGCCCACGGGGTAGGGTCTAGAGATTGATTTGGTATTTTATAACCTGGGCTCAGCGTTTACAGTTTGTCCAAGTAGTTGTCTACGGCAGGAATGCCCTCTTTTAGACCTTTGCGTTTCCTGATTTCAGCGACAACCAGGAAGGGTTTAGTGGTGGGGTCGCTGGGGTCTCCAGGTAGAATCTGCCAGTGGTCAAAAATACACTGAGGAAAGGCCTGGCCTCCAGTGTTGCTGCGCAGGTCAGCTGTGAACCCAAAGGACTCGTTGACAGGAAGGTAGGCTTTCACCACAAACATGGGAGTGCCAATCACTTGGGATTCCTCAAACACATGTCCTCGTTTCCTGTTCAACACGCCGTAGATGCCACCGACCACCTGCTCCGGGCTGTGGGAATAATCTGTCCTCCACCGCGGTGGATGGCGTCTGTGTGCAGCGTCACGTCGTGAATGTCAAAGCGAACTGCGCGCATATTCTCCTCACATAGAGCGCCCTGCACGTCGCCCACTGGAAACCAGCCACGACGCTGTCCTTGATCTCGTTGAGGTACTGAACCCCCTTTGTCACGTCTACCAGCAGGTTGGCCCCGCTTCCGTCTGGGCCGAAGCACCAGATCTTCCTGGCTTCTGTCACCTCCCACTCATACTTGTCGGCGAGGTAGCGGGCACGGACCTTGAGCTCCTGGCGATGGCCGACCTCCCCCTTCTCGATATCATCAGCCAGGCCGTCggggaaggggcgggacttcatGAAGAGACGATTGTGCTTGTTGGGGGACTTGGACAGACACATCTGGTACGATTCTTCCGTCACCGTCTCTCTGTAAGACACGACTGGGTCTGATTTCTGGAACGAGATGAAGGAAAAGGTAGTCAAATCCAAATCATTTTACTTtaagtgtttctttttttaaatttttatttcttttttgggggggcattttaggcctttatttataggacagctgaagacatgaaaggacagagagagagagagggggaatgacatgcaggaaagggccACGGGTTGGAGTCGACCCCGCGGcagctgcgtcgaggagtaaacctatGTATGCAGtttgggcgcgcgctctaccaggggagctacccaggcgccccactTTTAAGTGTTTCTGAAAGGAAAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159460 lncRNA upstream 7588 27244749 ~ 27244955 (+) True G118303
TU159432 lncRNA upstream 54084 27198183 ~ 27198459 (+) True G118283
TU159427 lncRNA upstream 69971 27179118 ~ 27182572 (+) False LOC120569025
TU159446 lncRNA upstream 75337 27162962 ~ 27177206 (+) False tcf3a
XR_005640817.1 lncRNA upstream 231434 27019846 ~ 27021109 (+) True LOC120568996
TU159464 lncRNA downstream 3461 27258374 ~ 27261355 (+) True G118306
TU159593 lncRNA downstream 108665 27363578 ~ 27366561 (+) True G118409
TU159604 lncRNA downstream 131983 27386896 ~ 27387956 (+) True G118420
TU159611 lncRNA downstream 144141 27399054 ~ 27399396 (+) False gpr35b
TU159690 lncRNA downstream 355185 27610098 ~ 27610325 (+) True G118488
XM_039814772.1 mRNA upstream 1272 27246293 ~ 27251271 (+) True LOC120567763
XM_039816588.1 mRNA upstream 56337 27191141 ~ 27196206 (+) True LOC120568858
XM_039816675.1 mRNA upstream 62313 27183776 ~ 27190230 (+) True mbd3a
XM_039816677.1 mRNA upstream 62313 27183777 ~ 27190230 (+) False mbd3a
XM_039816830.1 mRNA upstream 69823 27179099 ~ 27182720 (+) True LOC120569025
XM_039814863.1 mRNA downstream 6747 27261660 ~ 27281330 (+) True LOC120567815
XM_039814861.1 mRNA downstream 17299 27272212 ~ 27281330 (+) False LOC120567815
XM_039814864.1 mRNA downstream 17299 27272212 ~ 27281330 (+) False LOC120567815
XM_039814865.1 mRNA downstream 17299 27272212 ~ 27281330 (+) False LOC120567815
XM_039814722.1 mRNA downstream 32007 27286920 ~ 27291535 (+) True LOC120567742
TU159378 other upstream 366513 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 482632 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 652471 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 834535 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 850465 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 347111 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 902060 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2713500 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3314482 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3916304 31171217 ~ 31196233 (+) True G119114

Expression Profile