RNA id: XM_039815530.1


Basic Information

Item Value
RNA id XM_039815530.1
length 5032
RNA type mRNA
GC content 0.45
exon number 19
gene id tcf3a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27147061 ~ 27177206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTCGACATAGGTCCCCGCGAATTGCTACTCCGATCATTTTGTGTCGTGTTTGCAGCCACAAAAGAGGGAGCTATTGCAGTATCTAAGATAATCGCCGTgtcaatttaatttttttttaaaacctgcttTGTTTGGTTACTTCGCTTTAGCCGAGATTGGACATCGCTGATGTTTCAGCCTCCGTGTCCCTCAGTAGGCTGTGCTGCGGAGTGATACTTAACTTCATTGGAACCGACAATGTGGAGGCTGTTAAAATGTCTACTTGGAAAATGAAATGGTTACATTTTCTCTAACAATAAGGAAACGGAGCAGCAAAAGAGTTATGGTTCGTGTTAGAAACGTCTTTTCAGTTTCGTGACGAAGACAACAACCAAACGAGGCGACGGAGGAGTGGTTCATATTGTCTTTTCTCATTTTCATCAAGCCCTCAGTCCGGACCACGGGGGGAAGGATCCTATCCCtaactttgtttttctctctactGCGGCCGTCGATTTCTCTCTGTTGGATGCCATATAATTGAATCCAGatgtttgagccTCCAGTTTCAAACGGCAAGAACCGGCCGACTACTCTCGCCAGCAGTCAGTTTGGAGGTTCAGGTATAGATGAGAGGAGTGGGTCCAGTCCCTGGGGCCCAGGAGAACAGAACAGTCCATCTTTCAACCAGGGAAGGGGTTATGGGGAACAAGGCCTATACGGGGAGCAAGAGGGCATTGCTTCTGCCCCCATGTATGGATCAGGGATTGTTGGAAAGGCTGAGCGAGGACCATACTCGTCATTTGCAACACAGCCGGGCTTTATGCCCAGTGAGATGCCCATGCCCAGTCCCGATGCCCTCTCCCCGTCTGGCCTGAAGTCCAACTCCCAGTTTTATTCCTCCTATGAGGGAAGCAACCCTCGCAGGAGACCCTCACAGGAGCCTATTGGACCACAGCCTAAAAAGATCAGGAAGGTGCCCCCTGGCCTACCCTCCTCTGTTTATGCATCAGCCTCAGGAGAGGAttttaacagggacaatgctGGGTACCCTGCCTCCAAAGCAGGAAATGTCTACCAACATTATTACATGCAAGAAGGCCTCCACCCACCCTCTGATCCATGGGGCTCTGCCAGGTCGATGGTTCAGCCTGGTTATTCTGCCATGCTGGGCAACTCCCCCCATCTGGGCCAGCCTGCTCCCTTCACTGCGATCAACCCCCAAGACAGACTGAAACGGCAGCCACTGCCCCTCTCTCCCCAAAACTACCCCATGCATGGCAGTGAGGTGAATGGGGCTCATCCTGCTGGCTTCCACTCTGGCCCCCACTCTGGCCCCAGCAGCTTCGGAGTCCCCAGCCACACACCCCCTATGGCTGACACCATTATGGCCAATCGAGGAGCAGTACCTGGAAGTTCAGGTGATGAGATTGGAAAAGCCCTGGCATCTATCTATCCTTCAGACCCACACAGTAACACCTTCCCTCCGTCTCCGTCTACTCCCTCTGGCTCTCCCCAGGCTGTATCAGGCTCTGCATCCCAGTGGACTCGGTCCTCTGGCCAGGCCACACCTTCTCCCAACTTTGAGAGTGGAATTCAATCCATGCCAAGTAAAATGGAGGACCGTCTGGACGAAGCCATCAATGTTCTTCAGCGTCACGCCAGCGGACAAGGAGGGCCAGGACTGGCTGAGATGCAGAGTCTGCTCTCGTCTAGCTTAGGGTTGCCTCCAGCCTTCACCAGTGCAGCACTTGGATTGGCCAGTCGCCTGCCTGGACTGCTGTCCGGTCACCATGAGGACTCTCCTGGTCTGCCCTCTAGTGGAGGACTTATGCATGGTCACCACGGCCCCGCATCTGTCCAGCCAGGCTCTCAGCCTGAAGGTTTTACCGCCCTGTCCGGTAGCCTAAATCGCTCCAGTGGTTCTGATATCAAACGAGAGGACAAGGAGGACGACGAAAACTGCTCCATCACCGACAGGTCAGAGGACGAGAAAAAAGACGTGAAGGCCCGCCTGGGAACAAGTCTGGATGATGAGGAAGACGATGAAGATCTACCAGTGGAGGTAAAGGCTGAGCGGGAGAAAGTGAGGAGGCAGGCAAACAACACCCGTGAACGGCTACGTGTGCGGGACATCAACGAGGCTTTTAAGGAGCTGGGCCGCATGTGTCAGCTCCATCTGAGCCACGAGAAACCGCAGACCAAATTGATCGTACTGCAACAGGCCGTTAACGTTATACTCAACCTGGAGCAGCAAGTTCGAGAGCGTAATTTGAACCCAAAGGCTGCCTGCCtcaagaggagagaggaggaaaaagtTTCCGGCGTGGACCCCCAGATGCAGCTTGGTGGGGGTCACCCTGGTCTAGGAGGAGATGGACATATGTAATTCTCAGTTCCTGTTGATTGTACAGCCCTTAGAACACGTGGCCTTAATCTATCATTGTCatgcatctcagtgtgtgttaaTCAACTTTTGGaaagcacacacgcacacacacctcattACTGACAAAGCAGGTGGCCACATTCCTgactatgaatacaaaagtaacaagcaCACTCTTACAGAAAGAGGGGGAAATGTATTAATCTTAACATGACAACACTTTGAACCGAGGACACCGGTTTGGAGACAGTGGAAATTGGACATAAGGACATTCTTATGATCGTGTTTTTgtaagacattttgaaaaattgcTTTACGTGTTGGGAGCAAAACTTGTTTGGATCAAATGAAACTTTTTGGATCAACTGCTTGTGTAAGCAGAGTTAGGATTTGTATTGTTGGATGATTATTGGCATTCCCATCTGAAAAGCAGGTCTTACATTCTTCACAGGCAAAGAGGGACAACTGGGTTTATTATCTTATGATTGAACAAAACCCGTTTTAAACATGTGCCCAAAAGAGGCCTAATGCATAGTGTTAAGATAAAATCATTATCTCCTTTTGTGATGACTGAATTACAGAGGCAGGTTTGGAGACCTCCAGCAACTAACTGGGCAATCAGAGAGACAACTCGTTTTTTTGTCGGTATTCTGGTATTTCtagatgtattttttatttcttgcttTGACTAAAAAGGTGCCACAGTCACTGACTCCCATGTGGTgggttatttttttgtttattcttaACTGTGGATCCCTGAATCTTACCTCTCTTTAAGTCCTGTACATCTGTTACGGTCACTGCAATGCAAGTGAAACAGAGACTGCCAGAGAGAGACCCTCCACCGACACAAACCTGAGCAAAGACTCAATACAAATCCAGGAACCACACTGATGTTGAATCAAATGTGCAGATGCACATCTCAGCTGATTGGATTGGAGTGTACAGATGTCATCCTCACTGCTCAGCTCCTTCACCATCATGACTGTCACACAGCCATGTGGTCAGCCAGTGTCCCATCAGCCTGCCCCTGTCAAATCATACCTAAAGACTCTGTTACAGCATTAGGAACTTACTAAACTTAAGTCTCGAAGCAATTTGTATTGTGGTAAATCACATTTTGCGAGAAGGCAGAAATAATTGGGTATTGAAAGGGATCATGAGTGTACCTGCTACCCTGTAGAGAATTTACTTGCCATTGATGGACTTGTTTTGGTTGTTGCTGTGTTTTTGAGcatttagtgtttttttatttttatttttattttttttccccttttgaaCAATTGCAAAGCCTGTTGTAAGGATCTTCCTTTTGTAGAATTGATTTATCATTGCTTTTTGTatcgttttattttttactttgtaaGATAGTTGTATGACTTTTGTTTGTATCATTTGGaatgctctctttttttttgtttacattgtttaaATGTAAGACGACTCTCAATTTAGATTCCATGAACAAAGTgaggtgttttcttttgtgccAGGTGCTTAGAAATGACAaacttctgtaacatcacaTGTTGTGATAttgcctttctttttttttttttttaaaaaaaaaaaaaaaaaatgcatgtttcAACACAAACCTGTCAGACCAGTTGTAATTGGATTGTTCTGGTGTTTGTGACAGTTTTTCTTAAATggaacaatatttttttcttcagcaCACCCCCCCTCTTCTCTCCTGATGTCCAGCTCTTTGATGAGCTTGTTGATTAGTTTGAGGAAGGGGCAGTAGGGGCGGTCTGCACAATCTGCAACATAATTCACTGTTTTGTCAGGATCTGAAGCATAAAATGAATCAAAAAAGGGTGGCCTTAGTCATTTTCCTGACTTTGGGAGTTTTGATAATGGTTACTCACCAGTGCCTGAATACTTCTCTGCTACATGGTGGGTGATGTTGCATTTGAGGATTTATAGGttgtacctttttataataCAGATGTATAAAAACATACATACTTCTGTAACATCTGACAGTGTCTCAGAACATCTAAGTGAAGAATTACACTCATTGATACAGATTGCTTCAGTGTCTGGGtcattaaatgtaaaatgactAATAACCTGGTCTTCAACTTTGACGCTGAAAACTGCTTAAAATTTTTCATCTTTTATGTACTGagtttttttaagtataattttgtCCTTGACTGGCATGTGCATTGATATGTATGTACAGCTGTATGACATGTCAGCTTTATCATTGTAAGCTGATACTGATATGTAACAGTATTTGGTTTTCTACCTGTCATTTTATCACAAATCTTGCCCCACGGACTAGCCCCAAACATTATTTTCTTGTCAGTTACTCTAACCTTTCTGCAGAAAAATGTGGTGTTGTTATGATATGAAAATCTCTACTAAAGACttatacttttatttctttacatgAAAGATATGTCGGCGGAATCCAAGGAACAAAACATGCACCTAATATTCTTTGATAAGAGACCCTTTCTGTCCACAACAGATGAACTGCTACAAATCTCTCTGTCTTCACTCATGTTTGGGGACAACATCTATGTAGGCTATGTCCTCAAAGTGCCTCCAGTTtcctattttttatatataaagtagATATAGAGAACTGTTGTGTATATAACAGTAATGTAGCAATAAATGTGCCATTTTTAATAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159413 lncRNA upstream 91373 26976298 ~ 27055691 (+) True G118265
XR_005640817.1 lncRNA upstream 125955 27019846 ~ 27021109 (+) True LOC120568996
TU159409 lncRNA upstream 178074 26968504 ~ 26968990 (+) True G118263
TU159368 lncRNA upstream 208243 26878555 ~ 26938821 (+) False LOC120568791
TU159356 lncRNA upstream 289670 26854642 ~ 26857394 (+) False LOC120567599
TU159427 lncRNA downstream 1919 27179118 ~ 27182572 (+) False LOC120569025
TU159432 lncRNA downstream 20984 27198183 ~ 27198459 (+) True G118283
TU159460 lncRNA downstream 67550 27244749 ~ 27244955 (+) True G118303
TU159428 lncRNA downstream 75344 27252543 ~ 27255349 (+) False G118280
TU159429 lncRNA downstream 75344 27252543 ~ 27254913 (+) True G118280
XM_039816426.1 mRNA upstream 4149 27135001 ~ 27142915 (+) True map2k2b
XM_039816428.1 mRNA upstream 4149 27135001 ~ 27142915 (+) False map2k2b
XM_039814828.1 mRNA upstream 12913 27131153 ~ 27134151 (+) True LOC120567789
XM_039815734.1 mRNA upstream 56764 27044419 ~ 27090300 (+) True LOC120568316
XM_039816831.1 mRNA downstream 1898 27179097 ~ 27182720 (+) False LOC120569025
XM_039816830.1 mRNA downstream 1900 27179099 ~ 27182720 (+) True LOC120569025
XM_039816675.1 mRNA downstream 6577 27183776 ~ 27190230 (+) True mbd3a
XM_039816677.1 mRNA downstream 6578 27183777 ~ 27190230 (+) False mbd3a
XM_039816588.1 mRNA downstream 13942 27191141 ~ 27196206 (+) True LOC120568858
TU159378 other upstream 261034 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 377153 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 546992 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 729056 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 744986 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 424825 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 979774 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2791214 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3392196 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3994018 31171217 ~ 31196233 (+) True G119114

Expression Profile