RNA id: TU159504


Basic Information

Item Value
RNA id TU159504
length 2038
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G118337
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27174552 ~ 27197648 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATCCTAGAGTTCAAAATATGTCTGCGAGCCACACACTTGACAGTCAAGAGTCAAAAACTAGTAGAAAACGCTAAAACGAGCCGATCGCAGTGTAACAGACAGGATGTGAGGAGGAAAAGGTCCTGGTGTGGATGGATCTGCGCAAAGTCCTCCTGTAAGACGGTGAGCGGGAAGTGAAGGAGAGGGGCAGCAGACAGAAACCAGGCCTTCTCATGGTGAGGGCACATAATGATGCCAACGTGGAAACAGCATGAGCGGGCATTACACGCGGGCATCGGGCatcgggcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgagatgTAAAGGGATTGTCAGGCAGCCCAAATGTACAGAGAACTGACCTCAGACACATTCCTACAGTATCACTAATGGTATGTTTCTCACTTATTAAAAAAGGATAATTAATGTGAATCAATGCGGCAGCCACATTTCAAATGTGGGGCATCCAAATTCATCCATCATGTTATTGAATTCGATCAGGAAGTAAGGAGGTGTCTATTAATAGCATTCTTTTGTCATTACTGACGGCAAAAAAATGCATGGCAATGAGAAGCATGAAGTCATCCTTAGGAGGTCCCTCGGCTCTATTGTTTTCAGATAGGCGCCTGACTAAATGCggacattaaaaaaaaataaaaataaaaataaaaaaacactaaatgCTCAAAAACACAGCAACAACCAAAACAAGTCCATCAATGGCAAGTAAATTCTCTACAGGGTAGCAGGTACACTCATGATCCCTTTCAATACCCAATTATTTCTGCCTTCTCGCAAAATGTGATTTACCACAATACAAATTGCTTCGAGACTTAAGTTTAGTAAGTTCCTAATGCTGTAACAGAGTCTTTAGGTATGATTTGACAGGGGCAGGCTGATGGGACACTGGCTGACCACATGGCTGTGTGACAGTCATGATGGTGAAGGAGCTGAGCAGTGAGGATGACATCTGTACACTCCAATCCAATCAGCTGAGATGTGCATCTGCACATTTGATTCAACATCAGTGTGGTTCCTGGATTTGTATTGAGTCTTTGCTCAGGTTTGTGTCGGTGGAGGGTCTCTCTCTGGCAGTCTCTGTTTCACTTGCATTGCAGTGACCGTAACAGATGTACAGGACTTAAAGAGAGGTAAGATTCAGGGATCCACAGTtaagaataaacaaaaaaataacccACCACATGGGAGTCAGTGACTGTGGCACCTTTTTAGTCAaagcaagaaataaaaaatacatctaGAAATACCAGAATACCGACAAAAAAACGAGTTGTCTCTCTGATTGCCCAGTTAGTTGCTGGAGGTCTCCAAACCTGCCTCTGTAATTCAGTCATCACAAAAGGAGATAATGATTTTATCTTAACACTATGCATTAGGCCTCTTTTGGGCACATGTTTAAAACGGGTTTTGTTCAATCATAAGATAATAAACCCAGTTGTCCCTCTTTGCCTGTGAAGAATGTAAGACCTGCTTTTCAGATGGGAATGCCAATAATCATCCAACAATACAAATCCTAACTCTGCTTACACAAGCAGTTGATCCAAAAAGTTTCATTTGATCCAAACAAGTTTTGCTCCCAACACGTAAAgcaatttttcaaaatgtcttacAAAAACACGATCATAAGAATGTCCTTATGTCCAATTTCCACTGTCTCCAAACCGGTGTCCTCGGTTCAAAGTGTTGTCATGTTAAGATTAATACATTTCCCCCTCTTTCTGTAAGAGTGtgcttgttacttttgtattcatagtcAGGAATGTGGCCACCTGCTTTGTCAGTaatgaggtgtgtgtgcgtgtgtgctttCCAAAAGTTGAttaacacacactgagatgcatGACAATGATAGATTAAGGCCACGTGTTCTAAGGGCTGTACAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159486 lncRNA downstream 31644 27080007 ~ 27142908 (-) True G118321
TU159467 lncRNA downstream 210800 26960400 ~ 26963752 (-) True G118308
TU159466 lncRNA downstream 211447 26960400 ~ 26963105 (-) False G118308
TU159313 lncRNA downstream 442468 26731877 ~ 26732084 (-) True G118186
TU159297 lncRNA downstream 509371 26661621 ~ 26665181 (-) False G118175
TU159506 lncRNA upstream 934 27198582 ~ 27199689 (-) True G118339
TU159583 lncRNA upstream 96635 27294283 ~ 27295300 (-) True G118401
TU159684 lncRNA upstream 381320 27578968 ~ 27609694 (-) False G118482
TU159681 lncRNA upstream 381384 27579032 ~ 27609694 (-) True G118482
TU159682 lncRNA upstream 400343 27597991 ~ 27609694 (-) False G118482
XM_039814501.1 mRNA downstream 66826 27095802 ~ 27107726 (-) True onecut3b
XM_039814502.1 mRNA downstream 66832 27097103 ~ 27107720 (-) False onecut3b
XM_039814503.1 mRNA downstream 66832 27097245 ~ 27107720 (-) False onecut3b
XM_039814504.1 mRNA downstream 66832 27097252 ~ 27107720 (-) False onecut3b
XM_039814779.1 mRNA downstream 172500 26998041 ~ 27002052 (-) True LOC120567768
XM_039814770.1 mRNA upstream 13367 27211015 ~ 27244441 (-) True LOC120567762
XM_039814771.1 mRNA upstream 14195 27211843 ~ 27244441 (-) False LOC120567762
XM_039814774.1 mRNA upstream 54886 27252534 ~ 27261346 (-) True LOC120567764
XM_039816938.1 mRNA upstream 97722 27295370 ~ 27307660 (-) True sirt6
XM_039815154.1 mRNA upstream 112657 27310305 ~ 27317595 (-) True LOC120567993
XR_005640672.1 other downstream 349982 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 508600 26661621 ~ 26665952 (-) True G118175
TU158687 other downstream 2251234 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2638056 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 3153051 24021439 ~ 24021501 (-) True LOC120569138
TU159721 other upstream 473328 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 515819 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 519903 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 1788443 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 2222731 29420379 ~ 29420652 (-) True G118856

Expression Profile