RNA id: TU159593


Basic Information

Item Value
RNA id TU159593
length 2888
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G118409
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27363578 ~ 27366561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTACATTCTTAAAACCACATATAATGTATCCCATTGGACAACAATATATATCGAGCTGTGTAACTCAGTTACTTTTGGACTATTAATATACCTCTTGTACATTTTGTCAAACAGGGAAAGAGAAGGGAGACAAActattcttttttgtttttacctaatcttttttcaataaaaaaaatagattacTGACTTTTCAACACAAAAGTGGAGACACATAAAGAAAAAGGTGGATAAAAGacaaatgaaaatcacagcaaaaAGAAACATTAAACCCTTATAACGAATTCATATTTAACTAACTGATTTAttcgttgttgttgtttgttttttttattcctatGTTTTGTAAATTTGATGTCACGATATTAGGACAAACAGGAAGGGTTTTGACACTTAGTgtaacattcacaaaaatagaACTTACGTCCACAGTGATTATGGTTAAGGGTCTCATATTAGGTGCAAAGGTGCGAGGAGCACGGGGCTAAAAGATGACACTGGTAATAAAAGGGACAAGAGACCACAGCTAGCTCCCTGAGAGGCAGGTACTCAGACTCTGCTCAAGAACTTCACAGCACCCCGAGTAAgacattatcatcatcatcatctcaatGTGATAACAACCTTCAGAGAGCGTGTGATTTACGTACATGAAAAATGTAAACAGTTATGGGTGACCTTGTGTGACAgatattgaataaaaaaacaaaaataataaagcaGATTGACTGAAAAGTCTTACTGGCATTTGAGGCCCAACTCAGGGGGGCAGCTGGTAGCTCTGTCTGGCCTTAGACTAGTGTCCAGTGAGGAAGAGGAAAGTACAAGTGCTTGGATTTGGGACTAAAGGAGATAGGAACAGCAAATGTACAAAATAATACAGTTGTTCCAACCAGCATGGAGGGATTACGATACATATTATGGATCATCGTCGTTCCGGCCTGTAACCAACTGAAACAATTATGAGTGAAAGACAATTAtactacacatactgtactgacTGCTGGTTAGAAACAGGTAGGGAAACCCTGTGTATTTTATTATACCGTTCATGAAGTCCTCTTTTGCCTCGCTTTTGACTTTTTCTTAGTGTCCTTGTTTGTCCTCTTGTCATTTTAGCCGAGGGTGTCAGCAGCAACAGCGCAGACGGAAATCTCTCGGTTTAAATGCAAGACCaaggcaatgttttttttcgtgTCGCATCTGCAACACCAACAGGTGTCCACCCCCGTCGCTTGCGTCATGACCGCGCCTATAACCCAGCTGGATTTGCCATCAGGGCAAGAGGGGGCCGTTGCCATGGAAACCTGAGAGTACTGTCAAAAGAGAGGAAGTAGTCCAGAAAACGATTTGAGTCCAAATATTAGTTTTCCTGAAATATTCATCTTTTCCTCTATCTCTTACGATGCACCttttctctccccttctctcttaACTGAACTCACACATTCTAACTCTCTCCGTATGCTCATATAGTCatctatttacatttttatttaaaatatttgtttataaaTGTGTATATAAATTAAAGATAATTTCATCTTGTCCTGTCTCTAAGTGGCATTTACAAGGAAAGGGGTGCGTGGGACTGAGGTTTTTCATTGCATTACAAGAGTTTACAAAAAGGCAGCACCGAACACCGTCTAAATGTGTGGGAAGCTGGTTCTCAGCTGATTAAGCCGTGAGTCATATCAtatctgtgtgtttctttttttatatcagagAAAATGACTCTTGGTCCCTAATTGATGGTCAGTACAAGGATATTGTCTGTATGAATACGCGTGTGTACCAAACTGAGATGTATTAGCCTAATATAGAAAGAAATATTGACTGAGAGCTGTATTAATAGTGAGACCTGTGGATTGATACAACTTCATtctaatactaatactatgtAAAACTCTGTCTCAGAGTGGCAGTGTTGTACATTCACTGTTGTTGGGTTCTGGCTTGTGCACTGGTGCTTATTGGTGAGGTACATTCATAACTGGTTGGGCGATCCTCAGTGGATCTGATGTTAAACAAGTGTTAAAGCTTGGAGCTGTCTCATGGCTAGTGGGCTGTTATTATTAGGATGCCCATCCGCTTGGTGTTAATGCTACAATATGCAGAGGACCATGACCATGTGTGGTCTGTAGTGTAAGGTGCTTTGCCTGCTGGGAAAGTGGAGGACTACTTTGGGATCATTGGAGACGGAGTATTTAAAGTTCTGGATTGTCTCGTAACTGCTGGTTGTTGAGCTTCAACATCTCtatccttctctgtctctcctttttTGCTTCCCTACTTCTTAATATACTCTgttcatctctcttttttttgtctgtcggtctgtctgtctgtctagctGTTGGTGGAGTCCGGCAGAGACATCTCGCTGCCAAACACTTCCCGGTACAGTGGTGGGAAACTGTAGGCGGTATCTGGGTGGACCAAACGGAAAAACTCGAGTTTATCAACGTGGAGGTTACAGATAGACTTCATTGTGGGCAGCTTGGACACCATCTTGTCCAGTTTCTCATCTGAAGCACCACTCTTGTGTAGACTGTGCTGCAGAGCCAGGTAGACTTTCTCCTGGAGCTTCTGAACCTTCTGGCCTTCTGTTAGCCAGGGTCGATCTACGggaaagaaaatacaaacacatgAACCTACAGTTTTGCTTCTCCTTAAGTAGCTTCAATCCACATTGTCCGACAGTATATATTCCACGTCAGCTCCTGATTGACGAGTATGACGTGTACACTGAGTGAAATATTCAAATCCAAGACTGTCTTTAATGGCTGCACCATTCAATCAAATGGAAATACATGAGAAGTCTTGCACATCGTTTTAAcacatttcccaaaattcagcctgaCATATTTGATATGTTTAGAAACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159464 lncRNA upstream 102223 27258374 ~ 27261355 (+) True G118306
TU159428 lncRNA upstream 108229 27252543 ~ 27255349 (+) False G118280
TU159429 lncRNA upstream 108665 27252543 ~ 27254913 (+) True G118280
TU159460 lncRNA upstream 118623 27244749 ~ 27244955 (+) True G118303
TU159432 lncRNA upstream 165119 27198183 ~ 27198459 (+) True G118283
TU159604 lncRNA downstream 20335 27386896 ~ 27387956 (+) True G118420
TU159611 lncRNA downstream 32493 27399054 ~ 27399396 (+) False gpr35b
TU159690 lncRNA downstream 243537 27610098 ~ 27610325 (+) True G118488
TU159727 lncRNA downstream 322451 27689012 ~ 27690687 (+) True G118514
TU159731 lncRNA downstream 337609 27704170 ~ 27705071 (+) False LOC120568664
XM_039815152.1 mRNA upstream 34727 27318329 ~ 27328851 (+) True cactin
XM_039814722.1 mRNA upstream 72043 27286920 ~ 27291535 (+) True LOC120567742
XM_039814863.1 mRNA upstream 82248 27261660 ~ 27281330 (+) True LOC120567815
XM_039814861.1 mRNA upstream 82248 27272212 ~ 27281330 (+) False LOC120567815
XM_039814864.1 mRNA upstream 82248 27272212 ~ 27281330 (+) False LOC120567815
XM_039815328.1 mRNA downstream 27962 27394523 ~ 27399060 (+) True gpr35b
XM_039815340.1 mRNA downstream 67552 27434113 ~ 27442129 (+) True abhd17aa
XM_039816560.1 mRNA downstream 235439 27602000 ~ 27609692 (+) True LOC120568838
XM_039816272.1 mRNA downstream 245514 27612075 ~ 27632981 (+) True LOC120568637
XM_039816274.1 mRNA downstream 245514 27612075 ~ 27632981 (+) False LOC120568637
TU159378 other upstream 477548 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 593667 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 763506 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 945570 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 961500 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 235463 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 790412 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2601852 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3202834 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3804656 31171217 ~ 31196233 (+) True G119114

Expression Profile