RNA id: TCONS_00008588


Basic Information

Item Value
RNA id TCONS_00008588
length 721
lncRNA type intronic
GC content 0.38
exon number 5
gene id XLOC_003407
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 20928241 ~ 20930324 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtattatttgaCAAAATGGACTAgacacattaaaacaaacattcttataaacagattttttcttacaaaataaattatttgtttgtgGAATACGTGTGTTTTGATGAATCTGTGCTTTACAGATTTATACAGTCTTTCACGCTTAAAAAAGACCCTCGTTTTCGCCACCTACTGGCGTAACAGTGTAGTTTACATGATAAACTCCGGTAAAATGAATCATTCAGAGAAAAGATTCGATTCATTGAGATGACTCGCTTCACGTCGCCGATTCGAATGCACGTCAGTCAACTGTCACCAACCGTCTTCTGAAGAAATCATTTATCGCTGCGGCCGGACAGCAAACTGCTCTTTGGCAGGTACATTAAGAAAATGGGCAAAACATGAGTCCTAACGTTAGTGGAATGGAGGGAGGAACCATCGACCTATGACATTATTGTTTCTAAAAAGAACCTACTAAAAAAGAAATTTGAACCTGGGGATGTTGTGGATGTCGTCTATGAGGATAAAAGTTCACCAGCCACAGTTCTAGACATTAAAGAGAACAAAGAAACTCTCAGGAGGAGGATATTCAGAAGAGGGAAATTTATAGACATAGTACAGAAGAAGTTTCCAAACGTACCAATAAAATTGATCAGAGCAGCAGTAAGGGAAAAAGTAAATGATGAGCACAAGTTACAAGTAAGgaAAATGGAGTAAACGCAGCCTGTTCATTGGATTCtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008586 lncRNA upstream 37360 20888110 ~ 20890881 (+) True XLOC_003405
TCONS_00006647 lncRNA upstream 2094995 18832913 ~ 18833246 (+) True XLOC_003395
TCONS_00008585 lncRNA upstream 2186138 18741027 ~ 18742103 (+) True XLOC_003394
TCONS_00006646 lncRNA upstream 2220182 18702362 ~ 18708059 (+) False XLOC_003393
TCONS_00006682 lncRNA downstream 255145 21185469 ~ 21186684 (+) True XLOC_003413
TCONS_00008590 lncRNA downstream 372388 21302712 ~ 21306762 (+) True XLOC_003414
TCONS_00008591 lncRNA downstream 476363 21406687 ~ 21408834 (+) True XLOC_003415
TCONS_00008592 lncRNA downstream 682347 21612671 ~ 21627413 (+) False XLOC_003417
TCONS_00006685 lncRNA downstream 682347 21612671 ~ 21672419 (+) False XLOC_003417
TCONS_00006675 mRNA upstream 22063 20899029 ~ 20906178 (+) True XLOC_003406
TCONS_00006674 mRNA upstream 28974 20896122 ~ 20899267 (+) False XLOC_003406
TCONS_00006673 mRNA upstream 30167 20896122 ~ 20898074 (+) False XLOC_003406
TCONS_00006672 mRNA upstream 101488 20371206 ~ 20826753 (+) True XLOC_003404
TCONS_00006671 mRNA upstream 553462 20371179 ~ 20374779 (+) False XLOC_003404
TCONS_00006676 mRNA downstream 120002 21050326 ~ 21061566 (+) False XLOC_003408
TCONS_00006678 mRNA downstream 123164 21053488 ~ 21061302 (+) True XLOC_003408
TCONS_00006679 mRNA downstream 146548 21076872 ~ 21086254 (+) True XLOC_003410
TCONS_00006680 mRNA downstream 166015 21096339 ~ 21099783 (+) True XLOC_003411
TCONS_00006681 mRNA downstream 207624 21137948 ~ 21139503 (+) True XLOC_003412
TCONS_00006668 other upstream 895056 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006652 other upstream 1837429 19060099 ~ 19090812 (+) False XLOC_003396
TCONS_00006645 other upstream 2251684 18676442 ~ 18676557 (+) True XLOC_003392
TCONS_00006630 other upstream 2943467 17964689 ~ 17984774 (+) False XLOC_003382
TCONS_00006627 other upstream 3414609 17441957 ~ 17513632 (+) True XLOC_003377
TCONS_00006677 other downstream 121904 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006686 other downstream 720198 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006698 other downstream 1783691 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006700 other downstream 2466946 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006723 other downstream 3248499 24178823 ~ 24178938 (+) True XLOC_003444

Expression Profile

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