RNA id: TU159684



Basic Information


Item Value
RNA id TU159684
length 575
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G118482
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27578968 ~ 27609694 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GGTGATCATTACTATAgcttaaattaatttaataagtGCACGTAAATTGACAAATTAATGTCCTCGACAGCATTCATTTTCCAATTTCATCACATGGTAAGTCACGATTTACAGATACAATAATGGGCCCTTCGGCAAGTTAAGTGCAAATAATAGTTATCAGTAGCTTGTCAGAAATCTGAAATATATTGCATTCTTTGTCCATAAATGAAACAGACATTGATACATGAACAAACTTGTCACTTAACGTTCAGAAAGGACTAGATGGTATTTGCATTGGAAAGAGGAATGGCTGAGTTTGAAGTAAGATGTGAAGGGTCTCTAGTTTGCATAACTAATGAATGTCCTCTCATGTGCTCCTATGGGTCTGGCATGGGAGTGTTCTGTGGGTTAGTTGCACGCTAGGGGTCATCAGGCCTGCCTTCCCCAATGTTGGGTTTACAGACAGGCCGTCACTggtccagacacacacacaccaatacccTGAAGTCCATGGGAGAGGTCAGaagtcaaacaaacacataggAGACAGTAGTATTACAGGTATGTAGGCAGGTCCTatgtgtttgtttgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159583 lncRNA downstream 283668 27294283 ~ 27295300 (-) True G118401
TU159506 lncRNA downstream 379279 27198582 ~ 27199689 (-) True G118339
TU159504 lncRNA downstream 381320 27174552 ~ 27197648 (-) True G118337
TU159494 lncRNA downstream 388735 27119032 ~ 27190233 (-) True G118328
TU159713 lncRNA upstream 18192 27627886 ~ 27664712 (-) True G118504
TU159867 lncRNA upstream 485329 28095023 ~ 28099810 (-) True G118608
TU159885 lncRNA upstream 534734 28144428 ~ 28145034 (-) True G118613
TU159884 lncRNA upstream 536676 28146370 ~ 28148257 (-) False metap1d
TU159912 lncRNA upstream 590443 28200137 ~ 28200551 (-) True G118632
XM_039814866.1 mRNA downstream 22959 27552960 ~ 27556009 (-) True LOC120567816
XM_039816554.1 mRNA downstream 30348 27546546 ~ 27548620 (-) True fem1a
XM_039815448.1 mRNA downstream 37001 27455416 ~ 27541967 (-) False LOC120568140
XM_039815447.1 mRNA downstream 37001 27455416 ~ 27541967 (-) False LOC120568140
XM_039815436.1 mRNA downstream 37001 27455416 ~ 27541967 (-) False LOC120568140
XM_039816765.1 mRNA upstream 33633 27643327 ~ 27675354 (-) True LOC120568986
XM_039815858.1 mRNA upstream 103644 27713338 ~ 27714419 (-) True LOC120568372
XM_039815857.1 mRNA upstream 107704 27717398 ~ 27720152 (-) False LOC120568371
XM_039815856.1 mRNA upstream 107704 27717398 ~ 27720151 (-) False LOC120568371
XM_039815855.1 mRNA upstream 107704 27717398 ~ 27719640 (-) True LOC120568371
XR_005640672.1 other downstream 754398 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 913016 26661621 ~ 26665952 (-) True G118175
TU158687 other downstream 2655650 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 3042472 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 3557467 24021439 ~ 24021501 (-) True LOC120569138
TU159721 other upstream 61282 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 103773 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 107857 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 1376397 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 1810685 29420379 ~ 29420652 (-) True G118856

Expression Profile