RNA id: TU159727


Basic Information

Item Value
RNA id TU159727
length 1416
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G118514
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27689012 ~ 27690687 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTCTGCATGGTGTATGTTCTGTTACATATGTGCCTGAGCTGTCCTGCCCCCCAACCTCATGCAAATGCATGACTTGACTGACAGGGAGGCGGTCTTTTGTTGTGCTATTTCAGATCAGCACCGAGAGGGGTTGGTGCTCCAGTCAGACAAGGTGACTCCGTTGATGACACGCTCCTCTCATCCAAACTGTCATGAAGTCATTTCACATCCCCACTAGATGGCACAATAGATCTGCAAAAACTGAGCCTCTGCCAGCTACATCATGAGGTCTGGATGGCCATTTGATGAGCACAGCTGCCTTTGATTTCCAATATCAACCAGTAACGAAAACACACGTGGATAGAGCACAAGAGCATTTATTTtgtagcaaacaacagacatcTCTCAGATGTATTGCACTGTTATGCATATCATgctgtttcttttatttctgttaATCTTAATGATAGCTGAAGAAATAACACAGATGGAGGAAAGCAATAAGACAATGGAAAGACAAATAAATAGCGCCTAgcaataaatattaaatattatagAATAACATTAGAaagcattttaaatatttttaaattaattcaaGACAATTTTCTGGAGATATGTGATAATGGTGAGCAGTGCTTTCTAAGTGCTGGAGGTTGTAGGGGCAGCAGCAGTGTTGTTCTTTCTGCTGGAGGTTGTAGGGGCAGCAGTAGTGTTGTTCTTTCCTCTGCGGGCCTGCCTGTAAAACAGACCAAACAAGGGATAGCAGTTAAAATACCAGTTTGTGCTGCCCCAGAGCACTTGATATATCATATCTGAAGCAACCAACTAGCAGATATGGTGAATACCCAAAGACTGACTGAGATAACAAAGGACTACTCACTCTAACTCCTTGATCTTGTCAAACACCCAGTCCTGTTTCCAGTGGCTGCAGACTTCTCCCTCTGCGGTCTTAAATCTGGGAGGGATCACAAAGATCAATCACAATCCCTCTACAAATTTTAATGAAGAACTTTCGATTTTTCAACAGTTTTTGTTCactctttctttaaaaaaagaaattaggaAGTGATTCTTACATGACGGCGCGGACACATGGGAGGTCCTTCCTCTGGATCCTGTAGCCCAAGATGGGAGCGGTGACTTCTGCGACACCGACCTGAGTGCAGCACTCGATTATCTTCTTTTGGCCGCTGCTGTCATTGCCAGAACCCCAGCGAGGAGAGCCAGGCATGCCAGTCTTCTGATGCACAGCTGCATGGTTACTGCGTGAGATGTTCCAGAGGTTCTTTGCAGAAGCTGAATGTTTGATCTGGCTGAGGGAGGCGATTGATGTCCTCGGACCAGACCTCGAGGTTTTATACCGTGAAAAGAGGAACCAGGGCAAAGTAGCCGGATAAACTGTCTCTTCGGGCTTTCTACATATTGTGTGCG

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159690 lncRNA upstream 78687 27610098 ~ 27610325 (+) True G118488
TU159611 lncRNA upstream 289616 27399054 ~ 27399396 (+) False gpr35b
TU159604 lncRNA upstream 301056 27386896 ~ 27387956 (+) True G118420
TU159593 lncRNA upstream 322451 27363578 ~ 27366561 (+) True G118409
TU159464 lncRNA upstream 427657 27258374 ~ 27261355 (+) True G118306
TU159731 lncRNA downstream 13483 27704170 ~ 27705071 (+) False LOC120568664
TU159760 lncRNA downstream 253564 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA downstream 345774 28036461 ~ 28037330 (+) True G118549
TU159804 lncRNA downstream 428580 28119267 ~ 28119624 (+) True G118564
TU159792 lncRNA downstream 466286 28156973 ~ 28159589 (+) False LOC120568082
XM_039814839.1 mRNA upstream 956 27686164 ~ 27688056 (+) True LOC120567796
XM_039816272.1 mRNA upstream 56031 27612075 ~ 27632981 (+) True LOC120568637
XM_039816274.1 mRNA upstream 56031 27612075 ~ 27632981 (+) False LOC120568637
XM_039816275.1 mRNA upstream 56031 27612075 ~ 27632981 (+) False LOC120568637
XM_039816276.1 mRNA upstream 56031 27612075 ~ 27632981 (+) False LOC120568637
XM_039816318.1 mRNA downstream 13314 27704001 ~ 27705211 (+) True LOC120568664
XM_039815853.1 mRNA downstream 48305 27738992 ~ 27838118 (+) True epha4b
XM_039815854.1 mRNA downstream 48305 27738992 ~ 27838118 (+) False epha4b
XM_039814528.1 mRNA downstream 270215 27960902 ~ 28025246 (+) True dnah9l
XM_039814618.1 mRNA downstream 396130 28086817 ~ 28104458 (+) True LOC120567659
TU159680 other upstream 79294 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 802982 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 919101 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1088940 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1271004 26416508 ~ 26418008 (+) True ccl20a.3
TU159791 other downstream 466286 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2277726 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2878708 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3480530 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 3508273 31198960 ~ 31200014 (+) False G119123

Expression Profile