RNA id: TU159791



Basic Information


Item Value
RNA id TU159791
length 559
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC120568082
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28156801 ~ 28169970 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGCCGAGCCGAGGGCGTACTAGCTACGCTCTTTCTCGCTGCTCGCTCACTGTACGTGACGTCAAACCAGCATGGCGGCCAAGGTGCAATCTACCAAACGCGGGGACCCGAGTGAGCTGAAATCAATCTTCCAAAAGTACGCCAGTGTAGCGGACAAGGATGGAGAGAAGTTCATGACCCCGGGAGACTTTGTCCAGAGGTATCTAGGACTACACACGCAGATCCACCACAACCCCAAAACGGTACAGCTCATCGCTGCTGTGGCCGACACCACCAAGGACGGGTACGTACTGATCGGAAACGGCGTGCaagaacacatgaacacacagctTATCGTTACTAATTGACAGTTTATTGAGCCATGTCTGATCAGTAGTTGCCACTATCAGCCACTTGCAGATAAGATAGTCCCAATGACTCCCGTTTCCCAGACTGTTTGCGCATGAAAGTTGATCAAGTGACTTAGTGTTTGGATCTGTTTGGAAAATCTTAGTAATAtttctgatttgttttttaCTCAGACTGTTTATCTGTCAGCCCTAGGGTCATTTGCTGTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU159804 lncRNA upstream 37349 28119267 ~ 28119624 (+) True G118564
TU159760 lncRNA upstream 114783 27944251 ~ 28042190 (+) True G118537
TU159779 lncRNA upstream 119643 28036461 ~ 28037330 (+) True G118549
TU159731 lncRNA upstream 451902 27704170 ~ 27705071 (+) False LOC120568664
TU159727 lncRNA upstream 466286 27689012 ~ 27690687 (+) True G118514
TU159816 lncRNA downstream 16898 28176487 ~ 28178341 (+) True G118575
TU159790 lncRNA downstream 50126 28209715 ~ 28214108 (+) True G118554
TU159927 lncRNA downstream 101283 28260872 ~ 28261084 (+) True G118641
TU159932 lncRNA downstream 294927 28454516 ~ 28455138 (+) True G118645
TU159933 lncRNA downstream 320440 28480029 ~ 28480339 (+) True G118646
XM_039814618.1 mRNA upstream 52515 28086817 ~ 28104458 (+) True LOC120567659
XM_039814528.1 mRNA upstream 131727 27960902 ~ 28025246 (+) True dnah9l
XM_039815853.1 mRNA upstream 318855 27738992 ~ 27838118 (+) True epha4b
XM_039815854.1 mRNA upstream 318855 27738992 ~ 27838118 (+) False epha4b
XM_039816318.1 mRNA upstream 451762 27704001 ~ 27705211 (+) True LOC120568664
XM_039815282.1 mRNA downstream 33326 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA downstream 33949 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815057.1 mRNA downstream 114078 28273667 ~ 28473545 (+) True clstn2a
XM_039815387.1 mRNA downstream 721056 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 721465 28881054 ~ 28893212 (+) False LOC120568119
TU159680 other upstream 547255 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1270943 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1387062 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1556901 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 1738965 26416508 ~ 26418008 (+) True ccl20a.3
TU160295 other downstream 1808824 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2409806 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3011628 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 3039371 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 3300275 31459864 ~ 31460908 (+) True G119257

Expression Profile