RNA id: TU159885


Basic Information

Item Value
RNA id TU159885
length 607
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G118613
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28144428 ~ 28145034 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAATAAATGGAAGTTTGAGCATGTAGCaagcatagactgttaatatgaaTTTTACAGTCAATGGTAGCAAGCACATCCTTCACATTCTCCCTCATGTCACTCCTGATGGGCAGCGGCACAACACACCACATCAGACCATCTCAAATTTGTGTGTGGCCCATAACGATAAGGGGAAAGCACTATAGATTCATGTATTACTGTAATAATTCATCACTGTTGAATGTCTACCCCCAGGGCCTAAGGCCCTGCCAGACGAGGGTTTTTCATAGTATCACCAGGTGTAGTTGACAGATTGATTCAGCTCTTTTCCAGTTTATGTGCTGAATAATAAAATCTGCACAAACTAGAGGGCAAAAATCCTAGACTGGgttaaacccagcccgatctgccggtgatttgatttcaccctgttcaatcttaaaagactgagcttggtctggtgatagccagactacaaAAATGCTGCATTGGGGTTGTACATTCCACTCACACAGCATCCCTTTGTTCTAGTTTTCCAATTCCTCTCAACTATCCATCTCGTTCGTCTACAGGTGGGTTTAATAAAGAAAAGAACGTGATTAAATATCTCACAAGGTTCATTCTCTC

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159867 lncRNA downstream 44618 28095023 ~ 28099810 (-) True G118608
TU159713 lncRNA downstream 479716 27627886 ~ 27664712 (-) True G118504
TU159681 lncRNA downstream 534734 27579032 ~ 27609694 (-) True G118482
TU159884 lncRNA upstream 1336 28146370 ~ 28148257 (-) False metap1d
TU159912 lncRNA upstream 55103 28200137 ~ 28200551 (-) True G118632
TU159916 lncRNA upstream 60677 28205711 ~ 28206241 (-) True G118636
TU159956 lncRNA upstream 325933 28470967 ~ 28473620 (-) True G118668
TU159959 lncRNA upstream 336605 28481639 ~ 28481897 (-) True G118671
XM_039814619.1 mRNA downstream 10224 28104455 ~ 28134204 (-) True LOC120567660
XM_039814615.1 mRNA downstream 66913 28042117 ~ 28077515 (-) True LOC120567656
XM_039814614.1 mRNA downstream 66913 28044938 ~ 28077515 (-) False LOC120567656
XM_039814616.1 mRNA downstream 83127 28044938 ~ 28061301 (-) False LOC120567656
XM_039814617.1 mRNA downstream 102469 28028019 ~ 28041959 (-) True LOC120567657
XM_039815275.1 mRNA upstream 1237 28146271 ~ 28152770 (-) True metap1d
XM_039815280.1 mRNA upstream 24926 28169960 ~ 28185339 (-) False LOC120568081
XM_039815278.1 mRNA upstream 24926 28169960 ~ 28185339 (-) False LOC120568081
XM_039815279.1 mRNA upstream 24926 28169960 ~ 28185339 (-) False LOC120568081
XM_039815277.1 mRNA upstream 24926 28169960 ~ 28185339 (-) True LOC120568081
TU159738 other downstream 425669 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 430038 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 469068 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1319858 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1478476 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 841057 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 1275345 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1499329 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2719212 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2719212 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile