RNA id: TU159927


Basic Information

Item Value
RNA id TU159927
length 213
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G118641
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28260872 ~ 28261084 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACACTATCTAATATACTATACACACACGGTTGCATTTTTTGGTCATAGGATTCAtgttatatgttttttataaattttctAATACATCTTAATGACAAACATTGAAATGCCTATCTCTGTTTTAATAAAGGTTGGTCGACTTTGTAAAACATCAAGGATAGAGCTCAAACAATGAAAAGTCCAGGACTTTACTGCTTTATCTCTGACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159790 lncRNA upstream 46764 28209715 ~ 28214108 (+) True G118554
TU159816 lncRNA upstream 82531 28176487 ~ 28178341 (+) True G118575
TU159792 lncRNA upstream 101283 28156973 ~ 28159589 (+) False LOC120568082
TU159804 lncRNA upstream 141248 28119267 ~ 28119624 (+) True G118564
TU159760 lncRNA upstream 218682 27944251 ~ 28042190 (+) True G118537
TU159932 lncRNA downstream 193432 28454516 ~ 28455138 (+) True G118645
TU159933 lncRNA downstream 218945 28480029 ~ 28480339 (+) True G118646
TU159934 lncRNA downstream 224186 28485270 ~ 28485708 (+) True G118647
TU159968 lncRNA downstream 362270 28623354 ~ 28623572 (+) True G118676
TU159969 lncRNA downstream 394574 28655658 ~ 28655891 (+) True G118677
XM_039815282.1 mRNA upstream 57143 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA upstream 57143 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815281.1 mRNA upstream 90902 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 156414 28086817 ~ 28104458 (+) True LOC120567659
XM_039814528.1 mRNA upstream 235626 27960902 ~ 28025246 (+) True dnah9l
XM_039815057.1 mRNA downstream 12583 28273667 ~ 28473545 (+) True clstn2a
XM_039815387.1 mRNA downstream 619561 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 619970 28881054 ~ 28893212 (+) False LOC120568119
XM_039815386.1 mRNA downstream 619970 28881054 ~ 28893212 (+) False LOC120568119
XM_039815384.1 mRNA downstream 621739 28882823 ~ 28893212 (+) False LOC120568119
TU159791 other upstream 101283 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 651154 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1374842 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1490961 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1660800 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1707329 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2308311 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2910133 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2937876 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 3198780 31459864 ~ 31460908 (+) True G119257

Expression Profile