RNA id: TU159932


Basic Information

Item Value
RNA id TU159932
length 240
lncRNA type intronic
GC content 0.46
exon number 2
gene id G118645
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28454516 ~ 28455138 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaatgttgcctggtctgatgagtctcaatttctgttgagacattcagatggtagagtcagaatttggcgtaaacagaatgagaacatggatccgtcatgccttgttaccactgtgcaggctggtggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtaccaattgggcattgtttaaaagccacagcctacctgagcattgtttctgaccatgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159927 lncRNA upstream 193432 28260872 ~ 28261084 (+) True G118641
TU159790 lncRNA upstream 240408 28209715 ~ 28214108 (+) True G118554
TU159816 lncRNA upstream 276175 28176487 ~ 28178341 (+) True G118575
TU159792 lncRNA upstream 294927 28156973 ~ 28159589 (+) False LOC120568082
TU159804 lncRNA upstream 334892 28119267 ~ 28119624 (+) True G118564
TU159933 lncRNA downstream 24891 28480029 ~ 28480339 (+) True G118646
TU159934 lncRNA downstream 30132 28485270 ~ 28485708 (+) True G118647
TU159968 lncRNA downstream 168216 28623354 ~ 28623572 (+) True G118676
TU159969 lncRNA downstream 200520 28655658 ~ 28655891 (+) True G118677
TU159974 lncRNA downstream 223267 28678405 ~ 28678638 (+) True G118682
XM_039815282.1 mRNA upstream 250787 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA upstream 250787 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815281.1 mRNA upstream 284546 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 350058 28086817 ~ 28104458 (+) True LOC120567659
XM_039814528.1 mRNA upstream 429270 27960902 ~ 28025246 (+) True dnah9l
XM_039815387.1 mRNA downstream 425507 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 425916 28881054 ~ 28893212 (+) False LOC120568119
XM_039815386.1 mRNA downstream 425916 28881054 ~ 28893212 (+) False LOC120568119
XM_039815384.1 mRNA downstream 427685 28882823 ~ 28893212 (+) False LOC120568119
XM_039815385.1 mRNA downstream 427688 28882826 ~ 28893212 (+) True LOC120568119
TU159791 other upstream 294927 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 844798 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1568486 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 1684605 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 1854444 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1513275 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 2114257 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2716079 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2743822 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 3004726 31459864 ~ 31460908 (+) True G119257

Expression Profile