RNA id: TU160009


Basic Information

Item Value
RNA id TU160009
length 287
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G118717
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28833736 ~ 28834022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCAAATAGTAAGAACCTTCTTCATCACAAACCTGATGGTGCGTTACTTGATCCACATGGATCCACTTGCTGTCCCTCTGgctgttcctctctctgtccctgtatgttttcttcctcctcaccctctTCTTCATGCTTCTCACCCTCTGGAATTTCCTTCTCAGATCCCTCACTTTCATCACATGCTGGCTCTCCCTTTTCCTGCTCCTCAACTCTCTCAAAACCTtgatttgtttctctcacttaGCTCACACAAGTGTCTCGTCCATGGATGTAAGATAACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159989 lncRNA upstream 90501 28742960 ~ 28743235 (+) True G118697
TU159988 lncRNA upstream 94635 28738890 ~ 28739101 (+) True G118696
TU159974 lncRNA upstream 155098 28678405 ~ 28678638 (+) True G118682
TU159969 lncRNA upstream 177845 28655658 ~ 28655891 (+) True G118677
TU159968 lncRNA upstream 210164 28623354 ~ 28623572 (+) True G118676
XR_005640661.1 lncRNA downstream 81109 28915131 ~ 28918382 (+) True LOC120568121
TU160054 lncRNA downstream 107955 28941977 ~ 28942878 (+) True G118747
TU160060 lncRNA downstream 118659 28952681 ~ 28953465 (+) True G118752
TU160062 lncRNA downstream 118659 28952681 ~ 28953555 (+) False G118752
TU160077 lncRNA downstream 140179 28974201 ~ 28974588 (+) True G118762
XM_039815057.1 mRNA upstream 360191 28273667 ~ 28473545 (+) True clstn2a
XM_039815282.1 mRNA upstream 630007 28192915 ~ 28203729 (+) True pcyt1aa
XM_039815283.1 mRNA upstream 630007 28193538 ~ 28203729 (+) False pcyt1aa
XM_039815281.1 mRNA upstream 663766 28156801 ~ 28169970 (+) True LOC120568082
XM_039814618.1 mRNA upstream 729278 28086817 ~ 28104458 (+) True LOC120567659
XM_039815387.1 mRNA downstream 46623 28880645 ~ 28893212 (+) False LOC120568119
XM_039815388.1 mRNA downstream 47032 28881054 ~ 28893212 (+) False LOC120568119
XM_039815386.1 mRNA downstream 47032 28881054 ~ 28893212 (+) False LOC120568119
XM_039815384.1 mRNA downstream 48801 28882823 ~ 28893212 (+) False LOC120568119
XM_039815385.1 mRNA downstream 48804 28882826 ~ 28893212 (+) True LOC120568119
TU159791 other upstream 674147 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 1224018 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 1947706 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 2063825 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 2233664 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 1134391 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 1735373 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 2337195 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 2364938 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 2625842 31459864 ~ 31460908 (+) True G119257

Expression Profile