RNA id: TU160037


Basic Information

Item Value
RNA id TU160037
length 1022
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G118732
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28892151 ~ 28893217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGTTTATGTGAcaatatgtcttttatttttgaatgtttAGTTGATTATATAGTAAAGGAAATCAGATGAATAAAGAACACAATACATCAGTTTTAAGAATAAAAAGTAACAAGTTCATTAAACCAGTGGACTATAtgaattattaatagttattatGAAGTGTGATTACAGTTGCATTCTCCTCTTGTATCACAGAAAGGTCCGACAAAatatacacttttattttctatctggACATTTTGGATAAAAAGATCATCACCACTTATGTCTGGTAATTTTACCTTTGGATGGAGTCAGGCTATCTGTTTCCAGCCAGTACTCTTCATACTAAGCTAAGCTTCTGGTTTccacctgtttccagtctttatgctaagctaagttaccTATTTccccccgtttccagtctttatgctaagctaagttacctgtttccccctgtttccagtctttatgctaagctaagttacctgtttccccctgtttctagtctttatgctaagctaactgtttctgcccgtttccagtctttatgctaagctaaaatCTGCTCAAGGGAACTTCATATTTGGCGTGCACACATGAGAGTTGTATCGATCTGAACAATAACTCTCAGAGAGAAATCTAATTAGTGttaatattttatcagatgagTGTGCGCTGTTTATAACAGATAATATTCAGTAAACTAAAATGGAAAAGATTTGTGagtattcaaatgttttctgtatttcattttgtgttatttactGTAGATTAAAAATCCAATCACTGATTGTTTTTTGTCCAGCTCAGTGAGCCAGTTTCTGTCTAATTTTAAACCCAAATGTGAACTGTTCCCTAACTCTTCAGATAATAAACAAGTGAAAGTGAGTCAACTGTCAGCAAACTGAAAGTGAATCAATGATAGAGATTATAGATGAGCTGTAGAGGCATTATGATGGCGTGGtagagttacacacacaggttctTGGAGCACATGAAAGAAGCCTGGCTGGTACAAGCCAAGTCGTTCCAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640660.1 lncRNA downstream 89402 28796078 ~ 28802749 (-) True LOC120568120
TU159992 lncRNA downstream 136268 28755587 ~ 28755883 (-) True G118700
TU159990 lncRNA downstream 148916 28742960 ~ 28743235 (-) True G118698
XR_005640662.1 lncRNA downstream 192954 28698094 ~ 28699197 (-) True LOC120568122
TU159970 lncRNA downstream 235129 28656661 ~ 28657022 (-) True G118678
TU160044 lncRNA upstream 32401 28925618 ~ 28925964 (-) True G118739
TU160067 lncRNA upstream 41366 28934583 ~ 28961472 (-) True G118755
TU160071 lncRNA upstream 48786 28942003 ~ 28944159 (-) True G118756
TU160076 lncRNA upstream 80657 28973874 ~ 28974149 (-) True G118761
TU160098 lncRNA upstream 171464 29064681 ~ 29145281 (-) True G118783
XM_039815383.1 mRNA downstream 15549 28874875 ~ 28876602 (-) True LOC120568118
XM_039814984.1 mRNA downstream 231002 28659832 ~ 28661149 (-) True LOC120567913
XM_039814646.1 mRNA downstream 244618 28637052 ~ 28647533 (-) True LOC120567677
XM_039815566.1 mRNA downstream 278758 28593338 ~ 28613393 (-) True LOC120568207
XM_039816395.1 mRNA downstream 341791 28498947 ~ 28550360 (-) False LOC120568715
XM_039816556.1 mRNA upstream 207793 29101010 ~ 29103793 (-) True LOC120568834
XM_039816391.1 mRNA upstream 394059 29287276 ~ 29292640 (-) True LOC120568712
XM_039816392.1 mRNA upstream 394059 29287276 ~ 29290564 (-) False LOC120568712
XM_039814653.1 mRNA upstream 660242 29553459 ~ 29586063 (-) True si:ch211-153l6.6
XM_039814721.1 mRNA upstream 742886 29636103 ~ 29649692 (-) False LOC120567741
TU159738 other downstream 1173392 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 1177761 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 1216791 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 2067581 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 2226199 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 92874 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 527162 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 751146 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 1971029 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 1971029 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile