RNA id: TU160208


Basic Information

Item Value
RNA id TU160208
length 2315
lncRNA type intronic
GC content 0.37
exon number 2
gene id G118880
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29523113 ~ 29525489 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGAAACTACAGCTAAAAACTTTCATTAAATGTTTATATGCAAGTTCAGCATTATTTTCCTCATATAGATTATCCCATGAAAAGCTGGCAAGCATGTCTTTAAAtttcaaaatatttgacttACTTATAATTCttctgtgtatgtttttttaaagataatcttttgggcattttcggcctttatttttataggacagttgaagacatgaaaggggagagagagggggaatgacatgcagcaaagggccacaggtcagagttgaacctctatatatggacaCCCGCTCTATTTCCTTGGTATTTTTACCTCAATTTACTTTTATTGAAGAGTACTGAAAGATGGGGAAATGATCTGACAAGTCAGAATACAAATCCCCAGATCTCATAACTTTGCTCAAAGAGCAGAGATGTTATCAATCAAGGTTGCTGAGTTTTCTTTGACTCGTGTAGATTTGTGTATAACAGCAAAAAAGTAACTAGAATAGAGGGTATTCAGAAAATCAGTAAGGGTATCTACTTTGTTATTCAAGAGGTTAATATTAAAATCTCCTAAGATATAACAACGTTTTTTCTCATTATTTATCAGCTCAAGAGAACTAACCAGACTCTCATTAAAATGAGATTGCAGAGTCAGGTGGGCAATAAATAACACCAACAATAATATTTCTTCCACCAGAGACACCAGAGAGCGCTAAAAAAACCAGATTCTACCTCAGCTCTGTCTGAATTCAGAGAAAGATTATCCATGATTTTAAATTCATAATCAACACAAATAAACAGTGGTACTCCACCTCCTGTTCTATTCTCTCTTACATAGTGAACTGAATTGTATTTTGgtaatttaaacatttcttttgTGCTTTCTGATAAAGCAATAACAGAGAAATCATGTTTGAGTGAAGATAAGTAATGAAAAAATGTATCATAATTGCTCGAGAGGCTTCTTATATTGAGGTGAAAAGTAGAGAAAATATTAGCAGGCATAGAAACACATAAATCATTAAATTGGTTTGAGGCTTCAGATGATGAAAAGAAATTTTGGTCTGGGTCAACATCAAAATTGTAATTGTCAATTGTAGAAGGATCAAAGGCAGTGTTTCCCACAAATTAGAAGGCAATCTGCTGTGGTCACCCCGTGTCTGACCGGGGGGGGAATAATTCCTTCGTTCATAATTCGTTACACAGAACTTAATTTTCATCATCTAACATCTAACACATCTAACACCCTATACAAATTCCTCCACAGCTGTAcaaatttcacactttttttaaatttagtaTAACAGCCTACTTGCTGCAAAAAGTTTCTAATGCCCTATAATAAGGGAAGGCCTCAGGACAGGGTCCATTGATGGAGATCCTCAGGTAAGCTGCCAGGTGTTCTCCTTGAAGTTGGTTCCTGAGGTCTGTTTTCACCTGAAGATAAAGCAAAATGCTAATTGATATGAATACAAAATGCACCAATAAAAGACATTGGGAATTTCAATATATTGCTATTACCCTGTTCACTGTTGAGAAATCCCTTTAGCAGTTTACAGAGGAAACAGGGATAACCAGAGCAATGCTTGCAAGAAGGCTCAGCCCGGGGTAGAGGTTGGCCCACTCATCAAACTCACTCGCCAGTAAACTCAAGAGCTCCTCCTGGTTCTTGTTCTTGAAAGATAAGGGTTTGTCAtggcattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtgtcggtgtgtgtgtgtgttatgaccAGTCAAGTCAATTCACTTCTCACGTTGAGGGCAACATTTCCTGGAAAAGTGTCTGCAGATGAGAGGTGTTCATTGTGTTGTCTGTTAGTGCAGCTGCTTGTGGCCCAAAGACATGGAAGGCTCCAAGGATGTCCAGATTATGGAATCTCTTCTCCAGATTGGTTTCCAGGCCAGTTATGTAAGGGTGAATGAACCTACAATGACCATATCAGCATCTTTTTAGGAAGAGCCTACACTCAGTTTTGATAATAGGCATTAAGTGCCAAACCAGAGAGTATGTTCAGGACTACTACTTAtctttttaaaggttttaaaaTGTACCATTGAGGCCTGCACTAATCAATTTTTAATCTTGTcacatctatgtgaagacagtGAAGTGCATGAGAAGTAGCTTCACTGTCATTTTATATGAAAGAGCTCATCGATAAACAActgaataaaatacatttaaaagtaatgattagtatactgtgtgtatatgtatacagtacaggccaaaagtttggacacaccttctcattcaatgc

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160209 lncRNA upstream 2491 29518750 ~ 29520622 (+) True G118881
TU160182 lncRNA upstream 56510 29466260 ~ 29466603 (+) True G118859
TU160161 lncRNA upstream 177410 29345502 ~ 29345703 (+) True G118839
TU160122 lncRNA upstream 302362 29220360 ~ 29220751 (+) True G118802
TU160120 lncRNA upstream 344154 29178729 ~ 29178959 (+) True G118800
TU160212 lncRNA downstream 25085 29550574 ~ 29550809 (+) True G118884
TU160217 lncRNA downstream 50026 29575515 ~ 29576313 (+) True G118888
XR_005640599.1 lncRNA downstream 62156 29587645 ~ 29588546 (+) True LOC120567627
XR_005640601.1 lncRNA downstream 164971 29690460 ~ 29690894 (+) True LOC120567652
TU160285 lncRNA downstream 382344 29907833 ~ 29908479 (+) True G118943
XM_039814762.1 mRNA upstream 204295 29316220 ~ 29318818 (+) True si:ch73-257c13.2
XM_039814652.1 mRNA upstream 268437 29253394 ~ 29254676 (+) True LOC120567683
XM_039814651.1 mRNA upstream 287125 29234683 ~ 29235988 (+) True LOC120567682
XM_039814650.1 mRNA upstream 326751 29195088 ~ 29196362 (+) True LOC120567681
XM_039814648.1 mRNA upstream 330955 29191093 ~ 29192158 (+) True LOC120567680
XM_039814655.1 mRNA downstream 165468 29690957 ~ 29692353 (+) True LOC120567686
XM_039814656.1 mRNA downstream 210031 29735520 ~ 29743592 (+) True LOC120567688
XM_039814657.1 mRNA downstream 437926 29963415 ~ 29969913 (+) True LOC120567689
XM_039816652.1 mRNA downstream 506421 30031910 ~ 30033534 (+) True LOC120568908
XM_039816946.1 mRNA downstream 519405 30044894 ~ 30046190 (+) True LOC120569089
TU159791 other upstream 1363524 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 1913395 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 2637083 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 2753202 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 2923041 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 442924 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 1043906 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 1645728 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 1673471 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 1934375 31459864 ~ 31460908 (+) True G119257

Expression Profile