RNA id: TU160209


Basic Information

Item Value
RNA id TU160209
length 1735
lncRNA type intronic
GC content 0.41
exon number 2
gene id G118881
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29518750 ~ 29520622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcCTTGCAGAGCAAAATAGTTTGCtatatatatatatatatataaataaatattttatatttaaataaatattttatatttaaataaatagattGACTATTAAGCACAAGAGGCGTCACTTAATGTAGTTTTTGTTGTCCAGTGGGGAACTAGAGACGGGAAGAGCACTATTTTGGTGTTGAGAAAAGACTCATTTTCCGATGAATGTATTAAGCTTAAGCGACTTTTAGTTGCTGAACTCGGTCAAACTATATGACCAttagtgttgacgaactgaccgaagagccagttaattaacccgactcttgtcactgaaccgggagaatcgagtgccatacgtcaatgaaccgactcactcctgttttttttcttttacttcattcGTGCCGTCGTGTGTAGCTGgtagtaatctagctcattagcgcctccactggagtggtggtggtagaatcaatcaggaaatgagctaccTAGATGCctagaccgcgcaccaggctactgaacgagaccgaatgtaaccgtgcaactgGCCGGCCCGCTcaagtctaatgtaaccgtgcaaccggctgGCCCACTCGAGTCTAACgtaatcaagcggtgtcttggttctcggcaagtttgagttattaaccaagccttgtttctggtgcatcttagatgattgtgttcatggcaattcacacattatcgatggggaagtacagtacatcacatacaaatacacgtcatgttattttggtagttatgttaagttaaatgttagagaatgTTGCTACGtggtaggtaggctgtcacgaGGAGACCGCTCACTAGGCTACAGAACGAGACCGTAAGGACAGTAACCGAGGGTAATGCATGAGTCTATATTCAaccgggtgtctaggttctcggcaagtttgagttatcaaccgatcccagaagcctttatttctcgtgcatcttagatgattgtgtacatacaaattcatagactacattatcgatggatatcacatacaaatgcacgtcatgttatcttagtAGTTGTGTTAATATAAATGTTTGTTACATGATAGGTAGGCTGTCACCAGGAGACcgtgcaccaggctactgaacgagaccgtaaccgtgcctaatgcatgagtctatgtaatcaaacaggtgtctaggttctcggcaagtttgagttaccgatagcagaagcctttatgtctcgtgcattttagaattgtgttcatggaaattcataggttattaccaaggggaaagtattatatcacatacaaatacacaaatgttatcttggtagttatgttaagttaaatgttagaagtgaatgttgctacatggtagttAGACTGTCATGAGGAGACCGCCCACCAGgctaccgaatgtaaccgtggccaGTGCGTGAGTCTAGTGTCGGTCAGTATGAGTGTGTAAATAATATGTCGAGACCGACTGTAACCGCAACCGCTCGAGTCTTccgcggtgtcttggttcctgGCGGGGGAACGCGATTTATTTGTCAATTAATTTCTCCAATTCAGAAAGTTTTAGTatctttctatttttcttatGATGGTGTCACTTCTTTTCtgtgttcttttgttttttgtctttgtaatttgaGTAGATGTCATTGAAAATAAGGGTCGACCCTCAATGATCTTTGAAGAATCCCTCCAATGTGCTTATCAGATTAGTTGTGCGTCTGGCAGTGCAGTGCTGGGGAGTATGACACGtaaattagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160182 lncRNA upstream 52147 29466260 ~ 29466603 (+) True G118859
TU160161 lncRNA upstream 173047 29345502 ~ 29345703 (+) True G118839
TU160122 lncRNA upstream 297999 29220360 ~ 29220751 (+) True G118802
TU160120 lncRNA upstream 339791 29178729 ~ 29178959 (+) True G118800
TU160112 lncRNA upstream 344287 29174212 ~ 29174463 (+) True G118792
TU160208 lncRNA downstream 2491 29523113 ~ 29525489 (+) True G118880
TU160212 lncRNA downstream 29952 29550574 ~ 29550809 (+) True G118884
TU160217 lncRNA downstream 54893 29575515 ~ 29576313 (+) True G118888
XR_005640599.1 lncRNA downstream 67023 29587645 ~ 29588546 (+) True LOC120567627
XR_005640601.1 lncRNA downstream 169838 29690460 ~ 29690894 (+) True LOC120567652
XM_039814762.1 mRNA upstream 199932 29316220 ~ 29318818 (+) True si:ch73-257c13.2
XM_039814652.1 mRNA upstream 264074 29253394 ~ 29254676 (+) True LOC120567683
XM_039814651.1 mRNA upstream 282762 29234683 ~ 29235988 (+) True LOC120567682
XM_039814650.1 mRNA upstream 322388 29195088 ~ 29196362 (+) True LOC120567681
XM_039814648.1 mRNA upstream 326592 29191093 ~ 29192158 (+) True LOC120567680
XM_039814655.1 mRNA downstream 170335 29690957 ~ 29692353 (+) True LOC120567686
XM_039814656.1 mRNA downstream 214898 29735520 ~ 29743592 (+) True LOC120567688
XM_039814657.1 mRNA downstream 442793 29963415 ~ 29969913 (+) True LOC120567689
XM_039816652.1 mRNA downstream 511288 30031910 ~ 30033534 (+) True LOC120568908
XM_039816946.1 mRNA downstream 524272 30044894 ~ 30046190 (+) True LOC120569089
TU159791 other upstream 1359161 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 1909032 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 2632720 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 2748839 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 2918678 26590830 ~ 26600072 (+) True prkab2
TU160295 other downstream 447791 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 1048773 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 1650595 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 1678338 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 1939242 31459864 ~ 31460908 (+) True G119257

Expression Profile