RNA id: XM_039814717.1


Basic Information

Item Value
RNA id XM_039814717.1
length 1000
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120567741
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29636103 ~ 29649792 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAATTGAACAGCCTGACTGAATAACAGGACCACACTTTCAACATTACAAGATTATATAAAGCTGCATCCTGACGGGAATACAAAGTAATAATACAACAGAATGAAGATCTCTGTGAGTTTTACGCTGTGGCTGCTGCTCGTCTCGGTCTCCGCAAACGAAAGTTCCGAATGCCAGCATACTTATCTGCAAGATATCTACGCTGCGCTGAGAGAGATGACTGCCTCGTTGGTTCAACTGAAGGCGGACATGAGATTCCTGCAGGCTCAAGAACAAGCAGCACAGCTGAAGACTGAAGTTGACAAGCTGAAGCAACAACAGCTAGAACAAGCAGCACAGCTGAAGACTGAAGTGGACAAGCTGAAGCAAGACCTGAAAGAACAAGCAGCACAGCTGAAGACTGAAGTGGACAAGCAGAAGCAACAACAGCTAGGTGAATCAAACATTGGACCCTTTCGCTCGGACACTCCTCTGATCTACAAACACGTTACCACCAACATCGGAAATGCCTACAACCCAAACACAGGTGTGTTCACTGCCCCGGTGAGAGGAGCGTACAACTTTGAATGGTGGGTCGGTGCATTTGGAGACGGCAGCCACGCTTCAGCTGCTGTGTTGGTCAAGAACTCAGAGAAGATATCCTTGGCATATGAGCGACAGAATCAACATTTCGGGACTGGTTCTAGTGGTGTTACACTGTTGCTAGAGGTGGGAGACGTCGTGTTTCTGCGTCTGGTGGCTAACAGTTTGGTGTATGACAACGCAAATCACCACAACACCTTCAGTGGGTTTCTGCTGTTCACCATGTAAGACAgaaacagcagctctgtgataGTCACGCAGATTTTTGTTGTCTTAAACAAGTCTTCATAGCACTTCATAGATTTGCTCTGATTTCATTTTGCATTTCATTTGCATCcaaataatgaataataatcGACAGGACAATTCTTTCTGATTTTCtcttgtttctgtcattttaatcaaataataaaCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160239 lncRNA downstream 8383 29627392 ~ 29627720 (-) True G118906
TU160238 lncRNA downstream 9242 29626659 ~ 29626861 (-) True G118905
XR_005640788.1 lncRNA downstream 125306 29508648 ~ 29510797 (-) False LOC120568801
TU160274 lncRNA upstream 102150 29751841 ~ 29752060 (-) True G118933
XR_005640609.1 lncRNA upstream 132416 29782107 ~ 29796905 (-) True LOC120567751
TU160282 lncRNA upstream 188520 29838211 ~ 29838620 (-) True G118940
TU160292 lncRNA upstream 316836 29966527 ~ 29966743 (-) True G118950
TU160294 lncRNA upstream 318323 29968014 ~ 29968220 (-) True G118952
XM_039814653.1 mRNA downstream 50040 29553459 ~ 29586063 (-) True si:ch211-153l6.6
XM_039816391.1 mRNA downstream 343463 29287276 ~ 29292640 (-) True LOC120568712
XM_039816392.1 mRNA downstream 345539 29287276 ~ 29290564 (-) False LOC120568712
XM_039816556.1 mRNA downstream 532310 29101010 ~ 29103793 (-) True LOC120568834
XM_039815383.1 mRNA downstream 759501 28874875 ~ 28876602 (-) True LOC120568118
XM_039814654.1 mRNA upstream 35359 29685050 ~ 29690335 (-) True LOC120567685
XM_039814658.1 mRNA upstream 320399 29970090 ~ 29974289 (-) True LOC120567690
XM_039816749.1 mRNA upstream 670261 30319952 ~ 30438652 (-) False LOC120568974
XM_039816748.1 mRNA upstream 670261 30319952 ~ 30438652 (-) True LOC120568974
XM_039816750.1 mRNA upstream 705183 30354874 ~ 30438652 (-) False LOC120568974
TU160179 other downstream 215451 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 649784 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 1917344 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 1921713 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 1960743 27670976 ~ 27675360 (-) False LOC120568986
TU160542 other upstream 1214555 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 1214555 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 1476739 31126430 ~ 31174951 (-) True G119177
TU160575 other upstream 1520231 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 1520691 31170382 ~ 31171610 (-) False G119169

Expression Profile