RNA id: TU160295


Basic Information

Item Value
RNA id TU160295
length 520
RNA type TUCP
GC content 0.49
exon number 3
gene id LOC120567689
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29963415 ~ 29969913 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTGGAAAATGCAGAAGGAGGAGAAAGGCTGATAGACTTATCAGATGCGATTGTGGCATGTGGCTACACTGGGCTAATAAATGTTGACCAAAAAAAGGCCATCACAGAGTGAATGTAGACTTCCTTCTGCTTGCGCTATCTCCTGATTTCAGTGAGGAAGGGTCTGTGAGACGGCAGCGAGAGATGCAGATCATCAATTTTCTGCAGGATTTCTTGCAAAAGTTGGAAGACAGAGAAGCAGACAGCCAAGAAGAGGGCAGCCCTGAAGGTCAAAGTCACGTGGCAGCTGTGCATGGAACAAATGGTGGGGGGGAGCGCCTGTCAGTCCGGAGCTTCCTTCAGTGGGTCACAGGTCAGGCACATGTTCCACTGATCGAATCCAAGAGAGAGGCAATCAAGATAACTGTTAATTTTGATCATGACTGCGACTCCCGCTATGGGGCACATAGCCTTTGTTACCCCATTGTCAATGCTTGTGCTGTTGCCATTACATTTCCAACACGCCACTTAGCCACCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160293 lncRNA upstream 796 29967378 ~ 29967617 (+) True G118951
TU160286 lncRNA upstream 54755 29913450 ~ 29913658 (+) True G118944
TU160285 lncRNA upstream 59934 29907833 ~ 29908479 (+) True G118943
XR_005640601.1 lncRNA upstream 277519 29690460 ~ 29690894 (+) True LOC120567652
XR_005640599.1 lncRNA upstream 379867 29587645 ~ 29588546 (+) True LOC120567627
TU160306 lncRNA downstream 107549 30077399 ~ 30077712 (+) True G118964
TU160307 lncRNA downstream 107968 30077818 ~ 30078210 (+) True G118965
TU160338 lncRNA downstream 293409 30263259 ~ 30263559 (+) True G118994
TU160393 lncRNA downstream 482277 30452127 ~ 30453137 (+) True G119030
TU160395 lncRNA downstream 482877 30452727 ~ 30462896 (+) False G119030
XM_039814656.1 mRNA upstream 224821 29735520 ~ 29743592 (+) True LOC120567688
XM_039814655.1 mRNA upstream 276060 29690957 ~ 29692353 (+) True LOC120567686
XM_039816304.1 mRNA upstream 422364 29516140 ~ 29546049 (+) True LOC120568652
XM_039814762.1 mRNA upstream 649595 29316220 ~ 29318818 (+) True si:ch73-257c13.2
XM_039814652.1 mRNA upstream 713737 29253394 ~ 29254676 (+) True LOC120567683
XM_039816652.1 mRNA downstream 62060 30031910 ~ 30033534 (+) True LOC120568908
XM_039816946.1 mRNA downstream 75044 30044894 ~ 30046190 (+) True LOC120569089
XM_039817025.1 mRNA downstream 85965 30055815 ~ 30057109 (+) True LOC120569133
XM_039816413.1 mRNA downstream 131784 30101634 ~ 30218722 (+) True LOC120568730
XM_039816208.1 mRNA downstream 599245 30569095 ~ 30677352 (+) True LOC120568595
TU159791 other upstream 1808824 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 2358695 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 3082383 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 3198502 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 3368341 26590830 ~ 26600072 (+) True prkab2
TU160411 other downstream 599545 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 1201367 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 1229110 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 1490014 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 1895905 31865755 ~ 31868793 (+) True dnaaf6

Expression Profile